Gene
| Gene Model ID | pfu_aug2.0_50.1_00129 |
|---|---|
| Locus | scaffold50.1 : 206829 ... 209371 : - |
| To GenomeBrowser | scaffold50.1:206829..209371 |
| Genes list of scaffold | scaffold50.1 |
| Synonym | pfu_aug1.0_179985.1_06760 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_50.1_00129.t1 | 2 | 1 | zf-B_box | 11 | 49 | 1.6e-15 | 56.6 | 3.9e-08 | 0.00012 | 21.9 |
| pfu_aug2.0_50.1_00129.t1 | 2 | 2 | zf-B_box | 61 | 100 | 1.6e-15 | 56.6 | 7.1e-14 | 2.1e-10 | 40.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_50.1_00129.t1 | gi|699244455|ref|XP_009859177.1| | PREDICTED: zinc finger protein ZF(Bbox/RING)-1 isoform X1 [Ciona intestinalis] | 2.0e-11 |
| pfu_aug2.0_50.1_00129.t1 | gi|193083077|ref|NP_001122371.1| | zinc finger protein ZF(Bbox/RING)-1 [Ciona intestinalis] | 4.0e-11 |
| pfu_aug2.0_50.1_00129.t1 | gi|585699061|ref|XP_006822698.1| | PREDICTED: tripartite motif-containing protein 3-like [Saccoglossus kowalevskii] | 1.0e-10 |
| pfu_aug2.0_50.1_00129.t1 | gi|512854610|ref|XP_004916264.1| | PREDICTED: transcription intermediary factor 1-beta isoform X1 [Xenopus (Silurana) tropicalis] | 2.0e-10 |
| pfu_aug2.0_50.1_00129.t1 | gi|301616446|ref|XP_002937648.1| | PREDICTED: transcription intermediary factor 1-beta isoform X2 [Xenopus (Silurana) tropicalis] | 2.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_50.1_00129.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00129.t1 atggacgaacctgatcctcaatggtttgtacaatgtacaacatgtgatgacgtcacagtggtattttattgtaacacgtg tggagacgtcatgtgcaatccttgtaaggtccggcatgaacgcagcaatgcttccaaacatcatgtgatagcgccatatg cagagaagataaccgtgaagaaaagagcatgtccagagcacaaagagagcaactacattctctactgcgatgtctgcaat gttccagtatgcgatgtttgtacaacagatgcacacaagggtcatacattcagttctataaacgagatatacatcaaaca acgacaaatggttccaagtacaaaggatttgttggaaaagtcaaggaaagctacgaaagattatgtcaggtcaatggaga acatcgaaacctcaatgctctatacagcaaataaaataaaagaggaagttgactaccactatgaaagaagccacagaaca ctggagaaagaaaagagtcattatcttaaaagcttgaagggaaaagaggaggaagttcagtgccatctgacagagcttga ggaattgtcagagtcttatggagcgtgtctgaaatctgaggataggatagctcttctacttctagcaaggaatgtccacg ataaggaaagtccaacactcattgacgccacaccattaccagaattcataccaggtatggttgataaaacaagtattctg aagcaatttgggaaacttgttccatctgatcaaaaattcgaggaaaatgagaaaccaaaacgaggggacgcgaaacgaaa gcaaattggggagctcgttcaatctgatccaaaattcaaagaaaatgagaaactggaacaaacggaatctgcctctgagg aaccaccagaggatcatccagtagtacttggcactctccttgcaaagcctgtcgtagagggaagcctaacagtggaaatt acaggctcaataatagcctgtggtggacaaaatctcaccgatggtaaaaattcgatcaaacgacttggcgagaacagaac gctagagaccatgtttagtactggaaaatccaagccatatggaatatcaagccttcccaacgacaacatcctggtggcct tccgctgtgaacgaaaagttgtgctgtttagctctaccgggaggattgtccaagaattcatgaaagatgtcctacagcac ccgatgttcgtagcatacaacaacgtcactgatgacgtatgtgtctcagatgcagtagatccatactcaaaggggaaagt gcttgtgttcaagaggaatggaaaacttcgcctcatttacgactccacacaagagtactttgtaccacaaggtataaaaa cagacggctttggtcatatcctgatagcagactccgggatgggctgcatccacgttctggaaaaatatggaagccttctg cagaaggtgcaagttgacaaaaacatcccagctatgccgtattccatagacatagataaatatggctgtatctgggtcag cgaatatgatgccaaaatcgtccatgttgtgaagtacttggaaaccacatctaaattagaatag |
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Protein
| Protein ID | pfu_aug2.0_50.1_00129.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00129.t1 MDEPDPQWFVQCTTCDDVTVVFYCNTCGDVMCNPCKVRHERSNASKHHVIAPYAEKITVKKRACPEHKESNYILYCDVCN VPVCDVCTTDAHKGHTFSSINEIYIKQRQMVPSTKDLLEKSRKATKDYVRSMENIETSMLYTANKIKEEVDYHYERSHRT LEKEKSHYLKSLKGKEEEVQCHLTELEELSESYGACLKSEDRIALLLLARNVHDKESPTLIDATPLPEFIPGMVDKTSIL KQFGKLVPSDQKFEENEKPKRGDAKRKQIGELVQSDPKFKENEKLEQTESASEEPPEDHPVVLGTLLAKPVVEGSLTVEI TGSIIACGGQNLTDGKNSIKRLGENRTLETMFSTGKSKPYGISSLPNDNILVAFRCERKVVLFSSTGRIVQEFMKDVLQH PMFVAYNNVTDDVCVSDAVDPYSKGKVLVFKRNGKLRLIYDSTQEYFVPQGIKTDGFGHILIADSGMGCIHVLEKYGSLL QKVQVDKNIPAMPYSIDIDKYGCIWVSEYDAKIVHVVKYLETTSKLE |
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