Gene
| Gene Model ID | pfu_aug2.0_50.1_00130 |
|---|---|
| Locus | scaffold50.1 : 213468 ... 225471 : - |
| To GenomeBrowser | scaffold50.1:213468..225471 |
| Genes list of scaffold | scaffold50.1 |
| Synonym | pfu_aug1.0_1353.1_58446 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_50.1_00130.t1 | 2 | 1 | WWE | 29 | 93 | 2.2e-16 | 59.0 | 2.9e-09 | 1.1e-05 | 24.7 |
| pfu_aug2.0_50.1_00130.t1 | 2 | 1 | WGR | 77 | 91 | 7.8e-21 | 73.8 | 3.0 | 11000.0 | -3.6 |
| pfu_aug2.0_50.1_00130.t1 | 2 | 2 | WWE | 104 | 165 | 2.2e-16 | 59.0 | 9.5e-13 | 3.5e-09 | 35.9 |
| pfu_aug2.0_50.1_00130.t1 | 3 | 1 | PARP_reg | 148 | 165 | 0.0 | 161.2 | 2.4 | 8700.0 | -3.7 |
| pfu_aug2.0_50.1_00130.t1 | 2 | 2 | WGR | 279 | 347 | 7.8e-21 | 73.8 | 5.4e-24 | 2.0e-20 | 72.5 |
| pfu_aug2.0_50.1_00130.t1 | 3 | 2 | PARP_reg | 367 | 497 | 0.0 | 161.2 | 0.0 | 0.0 | 160.6 |
| pfu_aug2.0_50.1_00130.t1 | 1 | 1 | PARP | 514 | 603 | 1.4e-16 | 60.5 | 1.3e-19 | 5.0e-16 | 58.7 |
| pfu_aug2.0_50.1_00130.t1 | 3 | 3 | PARP_reg | 522 | 541 | 0.0 | 161.2 | 0.78 | 2900.0 | -2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_50.1_00130.t1 | gi|585672552|ref|XP_006818261.1| | PREDICTED: poly [ADP-ribose] polymerase 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_50.1_00130.t1 | gi|557023847|ref|XP_006012126.1| | PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_50.1_00130.t1 | gi|557023851|ref|XP_006012128.1| | PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_50.1_00130.t1 | gi|557329726|ref|XP_006037762.1| | PREDICTED: poly [ADP-ribose] polymerase 2 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_50.1_00130.t1 | gi|564255314|ref|XP_006266632.1| | PREDICTED: poly [ADP-ribose] polymerase 2 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_50.1_00130.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00130.t1 atggctaaaaggacagcaaatgatgagtcagaaggcagttcagcaaagaaatcacggtctggagcctcgaccatcgatgg ttttagtgtacgttgggagtgggagggcgataaaggagtttggatgcagtatgcagaggagatgaacaatgaacttatag atgcatttgttggtggaaagaaacagatggactttgatgttggaccaaaagtgaccatgcaaatcatttttgacaaaatg gttcagaaaaacaagaggacaggatgggaaagaagattacgatgtgcattggctgacaaaaaagatttttacatctggca atgggaggatgagaatggtaaatggaatccatatgatgtgaagacaagcatagcccttgaaaaagctgacgaagcagaca ctgtggactttgaagcttatcatcggtcatatagcatagacgtgaagaaaaaagaacaaatcaacactgttacaaaagtc aaacgtaaagtagatcgtgtcaaatcagcggcagagagtcctgaaccaacagatgtgaagccagttccatcagcttcttc atctaacggcactactaaaaagggaaaagggtcaggggtcaaggtcaaagaagaacctgaggatgaggaagaagaagaag tcaagccaaaagcaagcggaaaagacaaaaagggatcagcaaaaagtggtgggaaaaaagggaaatcaggcggagctagg ggtgatgatgaaggaacggaggaaatagtaaaaacacgtgttgtgacgggcaaagctccagtcgatgaggaatgtaccac tatgttaaacaaagcacacatcttcagtgaaggcaaagatatatgggactgtatgttaaaccagactaacgtaggcaata ataacaacaagtattacatcatacaattgttggaagagaacgccaagaagtcgtaccatgtatggcagagatggggtcga gtgggatatagcgggcagaataacctggtaccgtgtggaccagacctggatcaggccaagaaaatattcacaaaaaagtc aggagatgaagtagatgccaagataaagaaggaagattctgacatcaagctacctgattctaaactagacaaaagactac aggatctgattaacttgatttgtgacgttaagctgatggaggacacagtcagagaaatgaaatatgattccaaaaaggca cctctaggtaagctgacggctgatcagataaaggcaggatacgcagcactgaagaaaatagaaacatgtatcaacaatgg aaagtttggtccggcattgacggaagcttgcaacgagttctatacaagaatacctcatgactttgggatgagaacccctc cattaatacgtgacaaggaaactgttgaaatgaaaatgcagttgttagaggcactgggtgatatagaaatagcaatcaaa acaatgaagatgggagataaatcagaaaatcctgttgatcgacattaccatgctctggaatgtgaccttgaacccatcgg caaatctgatgatgacttcaaggttgccttgggtacaacaaacgacctccttgctgccgattacaaggctgataaattac cgtcaggaaaacacagtgtaaggggcctgggagccatagcacccgatccaactaccacaaaaacactgccagatggtatg aaagttccaattggaaaaggtaaaaacactggagtaaagaacccgtcaggatatacccttaattataacgagtatattgt gtacgacaccaaacagatcaagatgaagtacctgctgcgggtaaagttcaactataagtga |
|
Protein
| Protein ID | pfu_aug2.0_50.1_00130.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00130.t1 MAKRTANDESEGSSAKKSRSGASTIDGFSVRWEWEGDKGVWMQYAEEMNNELIDAFVGGKKQMDFDVGPKVTMQIIFDKM VQKNKRTGWERRLRCALADKKDFYIWQWEDENGKWNPYDVKTSIALEKADEADTVDFEAYHRSYSIDVKKKEQINTVTKV KRKVDRVKSAAESPEPTDVKPVPSASSSNGTTKKGKGSGVKVKEEPEDEEEEEVKPKASGKDKKGSAKSGGKKGKSGGAR GDDEGTEEIVKTRVVTGKAPVDEECTTMLNKAHIFSEGKDIWDCMLNQTNVGNNNNKYYIIQLLEENAKKSYHVWQRWGR VGYSGQNNLVPCGPDLDQAKKIFTKKSGDEVDAKIKKEDSDIKLPDSKLDKRLQDLINLICDVKLMEDTVREMKYDSKKA PLGKLTADQIKAGYAALKKIETCINNGKFGPALTEACNEFYTRIPHDFGMRTPPLIRDKETVEMKMQLLEALGDIEIAIK TMKMGDKSENPVDRHYHALECDLEPIGKSDDDFKVALGTTNDLLAADYKADKLPSGKHSVRGLGAIAPDPTTTKTLPDGM KVPIGKGKNTGVKNPSGYTLNYNEYIVYDTKQIKMKYLLRVKFNYK |
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