Gene
| Gene Model ID | pfu_aug2.0_50.1_00141 |
|---|---|
| Locus | scaffold50.1 : 511361 ... 526756 : - |
| To GenomeBrowser | scaffold50.1:511361..526756 |
| Genes list of scaffold | scaffold50.1 |
| Synonym | pfu_aug1.0_4949.1_67091 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nicotinic acetylcholine receptor subunit a5 | GO:0004889 GO:0016021 GO:0030054 GO:0045211 GO:0098655 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_50.1_00141.t1 | 2 | 1 | Neur_chan_memb | 1 | 83 | 1.8e-17 | 64.0 | 2.3e-21 | 3.5e-17 | 63.1 |
| pfu_aug2.0_50.1_00141.t1 | 2 | 2 | Neur_chan_memb | 127 | 153 | 1.8e-17 | 64.0 | 0.17 | 2500.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_50.1_00141.t1 | gi|676440276|ref|XP_009049125.1| | hypothetical protein LOTGIDRAFT_141278, partial [Lottia gigantea] | 2.0e-38 |
| pfu_aug2.0_50.1_00141.t1 | gi|526117349|ref|NP_001267746.1| | ligand-gated ion channel 4-like precursor [Aplysia californica] | 6.0e-34 |
| pfu_aug2.0_50.1_00141.t1 | gi|676427583|ref|XP_009044994.1| | hypothetical protein LOTGIDRAFT_136425 [Lottia gigantea] | 1.0e-31 |
| pfu_aug2.0_50.1_00141.t1 | gi|221222645|gb|ACM09845.1| | nicotinic acetylcholine receptor subunit a5 [Tribolium castaneum] | 3.0e-31 |
| pfu_aug2.0_50.1_00141.t1 | gi|242117926|ref|NP_001155994.1| | nicotinic acetylcholine receptor alpha 5 subunit isoform 2 precursor [Tribolium castaneum] | 3.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_50.1_00141.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00141.t1 atgggaattacgacgctgttgtccatgacagtcttccttatgatagttgctgagcgtcttccacctgtttctgataccgt tcctctgattggactttactatgggataacgatagcattggtgtcctttgcaactggtatgaacgtattcacactgaata tccaccacaaaggtggacggggaatagaagttccatcttcgattaaaaaagtcttctttggattcatagccagaatgctg ttcatcaagttagacctccccggtcatcctcctgagcctggcatgcagaaggtaccgacaggggactattactgctatga ggcagaacaagcggaagggacagaaaatggtggcatatcacctagattcgccaggaaagtacgaacagttccaactgact tgtgtgaaaaacaattcatgcgcgtcttgcataaagtgaatcagacgatagaaagaaatgagatgagacttgcagncaca tccgttcctgactga |
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Protein
| Protein ID | pfu_aug2.0_50.1_00141.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00141.t1 MGITTLLSMTVFLMIVAERLPPVSDTVPLIGLYYGITIALVSFATGMNVFTLNIHHKGGRGIEVPSSIKKVFFGFIARML FIKLDLPGHPPEPGMQKVPTGDYYCYEAEQAEGTENGGISPRFARKVRTVPTDLCEKQFMRVLHKVNQTIERNEMRLAXT SVPD |
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