Gene
| Gene Model ID | pfu_aug2.0_501.1_04255 |
|---|---|
| Locus | scaffold501.1 : 81122 ... 90375 : - |
| To GenomeBrowser | scaffold501.1:81122..90375 |
| Genes list of scaffold | scaffold501.1 |
| Synonym | pfu_aug1.0_1995.1_22812 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| hepatocyte nuclear factor 4-alpha-like | GO:0003677 GO:0006351 GO:0046872 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_501.1_04255.t1 | 1 | 1 | zf-C4 | 60 | 91 | 2.0e-13 | 50.3 | 4.4e-17 | 3.3e-13 | 49.6 |
| pfu_aug2.0_501.1_04255.t1 | 2 | 1 | Hormone_recep | 103 | 282 | 9.7e-37 | 126.0 | 3.20001e-40 | 2.4e-36 | 124.7 |
| pfu_aug2.0_501.1_04255.t1 | 2 | 2 | Hormone_recep | 406 | 422 | 9.7e-37 | 126.0 | 0.32 | 2400.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_501.1_04255.t1 | gi|637360485|ref|XP_008120106.1| | PREDICTED: hepatocyte nuclear factor 4-beta-like [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_501.1_04255.t1 | gi|301613114|ref|XP_002936047.1| | PREDICTED: hepatocyte nuclear factor 4-beta isoform X1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_501.1_04255.t1 | gi|573903606|ref|XP_006639526.1| | PREDICTED: hepatocyte nuclear factor 4-alpha-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_501.1_04255.t1 | gi|617463969|ref|XP_007573007.1| | PREDICTED: hepatocyte nuclear factor 4-alpha isoform X2 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_501.1_04255.t1 | gi|617463973|ref|XP_007573008.1| | PREDICTED: hepatocyte nuclear factor 4-alpha isoform X3 [Poecilia formosa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_501.1_04255.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_501.1_04255.t1 atgagggagttcatggaagatagctttctgtatgcttatttggaatcggcagcacagatgaaaacagaacctcagtatta ctacagttatgattatgattctccggagtcgatgggagccctgggaccaatgcctggacttccgggaaacgtgtccccca cccaggggatgagccagttttgttccatatgtggagaccgagccacggggaaacactacggcgcctcgagttgtgacgga tgtaagggcttcttcaggaggagcattacaaccccagtttgtggacaagatctgtcacagaaaatgatcgctacaacaaa cgatgtgtgcgagtccatgaaacagcaacttctcatactggtagaatgggccaagtacattccgtgcttctgtgaacttc ccctcgatgatcaggttgctttgttgagagctcatgcaggggaacacttggtgttgggggttgctcgcaggtcaatgggg gtcaaggacgttctattattaggaaccgatgcaatcataccacgcgtcacaactgatctggaaataggaaggtgtgcagg caggatcttagatgaattggtcgctccaatgcgagaagttcaaattgatgactctgaatttgcctgcatgaaagctattg ttttctttgatccagatgccaaaggtttaagcgatccacagaaaattaagaatttccgttaccaagtgcagatcaattta gaggactatataaatgatagacaatatgacaccagggggcgctttggtgaaattctgctgatgttacctccccttcaaag cattacatggcagatgatcgaacaaattcagttcgctaaattattcggaatggcaaaaatcgataacctccttcaagaaa tgctgcttggaggagcagcaccaggggaaaatggatctggatctacaacgccaacttccttaaatccgtcactgatttct aacacgtttacggaccaaatcgccagtccaggagaagtcatctcaatctcgcacacccccgtggggtgcctctccccaga agcgagtcagagtccccccttgggaggccccagtcctctagatctgggaatacaccctattgtacatacacccaccccac cactgactgaaaatattttcactaccacgtctgcattagacagtattcaacacattccaaacggacaaatttatacagtg gccccaactgtgaccatacctacaacagagtcttatcgggaaaaactctcgaaccatccatttaaacaagaagtgtcata a |
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Protein
| Protein ID | pfu_aug2.0_501.1_04255.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_501.1_04255.t1 MREFMEDSFLYAYLESAAQMKTEPQYYYSYDYDSPESMGALGPMPGLPGNVSPTQGMSQFCSICGDRATGKHYGASSCDG CKGFFRRSITTPVCGQDLSQKMIATTNDVCESMKQQLLILVEWAKYIPCFCELPLDDQVALLRAHAGEHLVLGVARRSMG VKDVLLLGTDAIIPRVTTDLEIGRCAGRILDELVAPMREVQIDDSEFACMKAIVFFDPDAKGLSDPQKIKNFRYQVQINL EDYINDRQYDTRGRFGEILLMLPPLQSITWQMIEQIQFAKLFGMAKIDNLLQEMLLGGAAPGENGSGSTTPTSLNPSLIS NTFTDQIASPGEVISISHTPVGCLSPEASQSPPLGGPSPLDLGIHPIVHTPTPPLTENIFTTTSALDSIQHIPNGQIYTV APTVTIPTTESYREKLSNHPFKQEVS |
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