Gene
| Gene Model ID | pfu_aug2.0_502.1_07608 |
|---|---|
| Locus | scaffold502.1 : 289713 ... 303519 : + |
| To GenomeBrowser | scaffold502.1:289713..303519 |
| Genes list of scaffold | scaffold502.1 |
| Synonym | pfu_aug1.0_22.1_14726 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_502.1_07608.t1 | 1 | 1 | 7tm_1 | 3 | 91 | 7.9e-22 | 77.6 | 1.3e-25 | 9.7e-22 | 77.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_502.1_07608.t1 | gi|676447235|ref|XP_009051341.1| | hypothetical protein LOTGIDRAFT_72363, partial [Lottia gigantea] | 9.0e-20 |
| pfu_aug2.0_502.1_07608.t1 | gi|727002742|ref|XP_010391546.1| | PREDICTED: opsin-5 [Corvus cornix cornix] | 4.0e-19 |
| pfu_aug2.0_502.1_07608.t1 | gi|669293722|ref|XP_008640042.1| | PREDICTED: opsin-5 [Corvus brachyrhynchos] | 4.0e-19 |
| pfu_aug2.0_502.1_07608.t1 | gi|591387921|ref|XP_007068374.1| | PREDICTED: opsin-5-like [Chelonia mydas] | 2.0e-18 |
| pfu_aug2.0_502.1_07608.t1 | gi|530611630|ref|XP_005297415.1| | PREDICTED: opsin-5 [Chrysemys picta bellii] | 2.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_502.1_07608.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_502.1_07608.t1 atgctgaactcacttgtaataattatctgcttgaagagaagatctcacctggtgtcgtcggactacttcattgtcaatct agctgtttgtgatcttattttgtcagtgattggattaccgtttggaatcacatcatcgttcacccacaaatggctgttcg gaagttacggttgccaggcttatggcttcatgggattcttctgtggagttgtcagcatatctacgctagctatgatgagt ttttcaagatacatcaatgtttgcaaaatgaataaagatgttggcgtgagggggtccaaggagcaggagaaaatcggagt actcggagaaaaaaaccatgccaaggcctgggtggtggaccacctaccctcccacataagtcccttcgccgaatctagga ttcgaaccaggaaccttagggatgagaagcgaccgccccaccactgcgctaacctggccattaaatag |
|
Protein
| Protein ID | pfu_aug2.0_502.1_07608.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_502.1_07608.t1 MLNSLVIIICLKRRSHLVSSDYFIVNLAVCDLILSVIGLPFGITSSFTHKWLFGSYGCQAYGFMGFFCGVVSISTLAMMS FSRYINVCKMNKDVGVRGSKEQEKIGVLGEKNHAKAWVVDHLPSHISPFAESRIRTRNLRDEKRPPHHCANLAIK |
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