Gene
| Gene Model ID | pfu_aug2.0_504.1_14240 |
|---|---|
| Locus | scaffold504.1 : 213178 ... 218163 : - |
| To GenomeBrowser | scaffold504.1:213178..218163 |
| Genes list of scaffold | scaffold504.1 |
| Synonym | pfu_aug1.0_14272.1_61332 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| actin depolymerizing factor | GO:0003779 GO:0015629 GO:0030042 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_504.1_14240.t1 | 1 | 1 | Cofilin_ADF | 21 | 150 | 6.1e-37 | 126.3 | 9.3e-41 | 6.9e-37 | 126.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_504.1_14240.t1 | gi|676471688|ref|XP_009059255.1| | hypothetical protein LOTGIDRAFT_164500 [Lottia gigantea] | 2.0e-34 |
| pfu_aug2.0_504.1_14240.t1 | gi|33337647|gb|AAQ13474.1| | actophorin related protein [Crassostrea gigas] | 6.0e-34 |
| pfu_aug2.0_504.1_14240.t1 | gi|171690290|ref|XP_001910070.1| | hypothetical protein [Podospora anserina S mat+] | 2.0e-30 |
| pfu_aug2.0_504.1_14240.t1 | gi|575478912|ref|XP_006678750.1| | hypothetical protein BATDEDRAFT_87998 [Batrachochytrium dendrobatidis JAM81] | 7.0e-29 |
| pfu_aug2.0_504.1_14240.t1 | gi|597982467|ref|XP_007363778.1| | actin depolymerizing factor [Dichomitus squalens LYAD-421 SS1] | 1.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_504.1_14240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_504.1_14240.t1 atgtccaggaagtgtggcggaggaggatctggaccgacgtctggagtccaagtggacgatgattgtatacatcgatacgc agatctacaaaaacaccacaaattaaagtacctaacattcaaactctcagaggatgccaagaaaattgtcgttgataaag taggacaactaggtgcgagttatgatgacttcgtagaagaactaaagaatgcaggacgagatggcgaaggcagatatgca gttttcgattttgaatacaacgtccggggtcaagtggcagcaaaaattgtcttttttctttgggtgccagatgggataaa ggtgaaacaaaggatgttgtacagcagtagcgttaaagcgctcaaacaaaaactaaacggaatccatatagaaatgcaat gtaacgatgaatgcgacttagctcagagcgaaatattacaaaaatgtacggagagaggatacgattaa |
|
Protein
| Protein ID | pfu_aug2.0_504.1_14240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_504.1_14240.t1 MSRKCGGGGSGPTSGVQVDDDCIHRYADLQKHHKLKYLTFKLSEDAKKIVVDKVGQLGASYDDFVEELKNAGRDGEGRYA VFDFEYNVRGQVAAKIVFFLWVPDGIKVKQRMLYSSSVKALKQKLNGIHIEMQCNDECDLAQSEILQKCTERGYD |
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