Gene
| Gene Model ID | pfu_aug2.0_505.1_17496 |
|---|---|
| Locus | scaffold505.1 : 1 ... 19618 : + |
| To GenomeBrowser | scaffold505.1:1..19618 |
| Genes list of scaffold | scaffold505.1 |
| Synonym | pfu_aug1.0_1212.1_29616 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| poly (adp-ribose) polymerase member isoform cra_b | GO:0016020 GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_505.1_17496.t1 | 3 | 1 | Macro | 3 | 41 | 3.8e-21 | 75.1 | 1.3e-08 | 3.7e-05 | 23.6 |
| pfu_aug2.0_505.1_17496.t1 | 2 | 1 | PARP | 50 | 66 | 7.5e-26 | 90.8 | 1.3 | 3800.0 | -3.0 |
| pfu_aug2.0_505.1_17496.t1 | 3 | 2 | Macro | 150 | 259 | 3.8e-21 | 75.1 | 7.8e-18 | 2.3e-14 | 53.3 |
| pfu_aug2.0_505.1_17496.t1 | 3 | 3 | Macro | 374 | 395 | 3.8e-21 | 75.1 | 1.6 | 4800.0 | -2.6 |
| pfu_aug2.0_505.1_17496.t1 | 2 | 2 | PARP | 548 | 726 | 7.5e-26 | 90.8 | 7.9e-28 | 2.4e-24 | 85.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_505.1_17496.t1 | gi|597747889|ref|XP_007235919.1| | PREDICTED: poly [ADP-ribose] polymerase 14-like isoform X2 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_505.1_17496.t1 | gi|597747887|ref|XP_007235918.1| | PREDICTED: poly [ADP-ribose] polymerase 14-like isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_505.1_17496.t1 | gi|512880948|ref|XP_004919736.1| | PREDICTED: poly [ADP-ribose] polymerase 14-like isoform X1 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_505.1_17496.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_505.1_17496.t1 gtactgcagactttcttgaataattgcctcaaagaagcctcctcaaagaaagctaaatccatagccatgccagcaatggg tacaggaaagctgggttaccaaaaagacatggttgccaagagcatgtttgactcagcagcaggcgtgtctagtcataagt cgtcaatcaaagaagtcagatttgtcatctacgagaaagatacagaaactcttcaggcctttgaaaaagaaattacatcc agatcttcatcagagtcggcatctggagataaaccaaaaaagaaaggacctcgccatggaaataagctggagaaaaagga ggaggattacgaccatttacccgagctagacccacctccaagtgaccagagggtctccgtacccatgggctctataaaca tgaacatctatcaaggggacctaactgtagcagatgttgatgttatagtcaacagcacgaacagtgaaatagatttaagt aaaggtgcagtggctaaaagtatacagaagttaggtggccaagaattacagaaacaagttcaagttcaaaaggaaaccat gaagaaggagggtatagcagtaacaaccaatggaggtccatcatcaagattgtcagctaaatttatagtacatattgatg ctcaaaatgacaagaaaacctggaaacaaaagatcgtgcaaatattacaaaaagccgaggaaatcagaatgaacagcatt gccatgccggctttagggacaggtgtaggaggtgtccctgttgcagagatagccaaacatatgtatgaagcaatagaaaa gttccagaaagaaacaccacctcaacatttaaaagaagtacacattgttatcttccaacaacaaatggtacaaagcttta taatagccatgcaggggtgcttccagggtgccaaacctaaaggaattctaggaaaagcctggaattatcttaaatcaggt ggaggaggagagactgaagatccaaaatggcaggccaaggtatcgaagcagcctcccagtacttcatgtgttacactggt ggtgtttggggacaatggccaggatatagacaaagccatcagtcacctggaaaaaatcattgaagaggattataatacaa aattgtttaaggagagaatcatttctcaactcagtcaaaatcagataaagcagatcaagcatctggagactaaacatgat gtagaagtgactgttgacaaagacaataattctataatattaaacggcacaaatgagaaccttatgggtgctgcagatgc tattcatactatcattagagaagctgagagaaacaaacaagcaaaacaacaagccgaactggtatcagaaatggttcaat ggtgctttcttgaaactggtaccgatcaaacgactatggaagagtatccagcaagtgttaattttctcattgaaacagca tttcgcaacaaagatcctgtggttaaatttaaggacaattctgggaatgaatacacaataagctttcaaaatatggagga gtacccaactagtacaccagatgataaggtcaaagtgttgagaagagaaaagcttaaagatgctgcctttgaggtaccta gtacatggaaagacatgaaggacaccgagaacctgactgttgtaccagtgagttcaggagataaggagtactctgatgtc atcagtaaattccatcaaagtgtgggctccaccaggccaattatcaagctggagagaatccagaacaagatgctgttcca gcaatatctagcaaaaaagaagcttatggatgctcagaataagccaggcacacagaatgagaaagaattatggcatggca ctgcaccagaggcagtagacagtatcaactgttatggattcaataggagctactgtggtaaaaatgccactgcttttgga ttaggagtatattttgctgtcaatgctagctattcttcgtcaaacacttactcaaggccagatggtgcaggacacaaacg gatgtatttatgccgtgttctcacaggggaatacacaaagggaaattcagcattttttgttccccctgtcaaatctggag ttgtgctgtatgattcagtggtagacaaccccaatgggccagggatgtacattattttcaatgatacacagggatatccc gattatttaataacattcacataa |
|
Protein
| Protein ID | pfu_aug2.0_505.1_17496.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_505.1_17496.t1 VLQTFLNNCLKEASSKKAKSIAMPAMGTGKLGYQKDMVAKSMFDSAAGVSSHKSSIKEVRFVIYEKDTETLQAFEKEITS RSSSESASGDKPKKKGPRHGNKLEKKEEDYDHLPELDPPPSDQRVSVPMGSINMNIYQGDLTVADVDVIVNSTNSEIDLS KGAVAKSIQKLGGQELQKQVQVQKETMKKEGIAVTTNGGPSSRLSAKFIVHIDAQNDKKTWKQKIVQILQKAEEIRMNSI AMPALGTGVGGVPVAEIAKHMYEAIEKFQKETPPQHLKEVHIVIFQQQMVQSFIIAMQGCFQGAKPKGILGKAWNYLKSG GGGETEDPKWQAKVSKQPPSTSCVTLVVFGDNGQDIDKAISHLEKIIEEDYNTKLFKERIISQLSQNQIKQIKHLETKHD VEVTVDKDNNSIILNGTNENLMGAADAIHTIIREAERNKQAKQQAELVSEMVQWCFLETGTDQTTMEEYPASVNFLIETA FRNKDPVVKFKDNSGNEYTISFQNMEEYPTSTPDDKVKVLRREKLKDAAFEVPSTWKDMKDTENLTVVPVSSGDKEYSDV ISKFHQSVGSTRPIIKLERIQNKMLFQQYLAKKKLMDAQNKPGTQNEKELWHGTAPEAVDSINCYGFNRSYCGKNATAFG LGVYFAVNASYSSSNTYSRPDGAGHKRMYLCRVLTGEYTKGNSAFFVPPVKSGVVLYDSVVDNPNGPGMYIIFNDTQGYP DYLITFT |
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