Gene
| Gene Model ID | pfu_aug2.0_505.1_17507 |
|---|---|
| Locus | scaffold505.1 : 194980 ... 212388 : + |
| To GenomeBrowser | scaffold505.1:194980..212388 |
| Genes list of scaffold | scaffold505.1 |
| Synonym | pfu_aug1.0_9865.1_31841 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| t-complex protein 1 subunit alpha | GO:0005524 GO:0005737 GO:0006457 GO:0051082 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_505.1_17507.t1 | 2 | 1 | Cpn60_TCP1 | 31 | 54 | 0.0 | 401.2 | 3.1e-07 | 0.0023 | 16.6 |
| pfu_aug2.0_505.1_17507.t1 | 2 | 2 | Cpn60_TCP1 | 54 | 501 | 0.0 | 401.2 | 0.0 | 0.0 | 387.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_505.1_17507.t1 | gi|676484424|ref|XP_009063342.1| | hypothetical protein LOTGIDRAFT_235667 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_505.1_17507.t1 | gi|675887800|ref|XP_009029402.1| | hypothetical protein HELRODRAFT_115822 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_505.1_17507.t1 | gi|260830111|ref|XP_002610005.1| | hypothetical protein BRAFLDRAFT_62187 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_505.1_17507.t1 | gi|524875791|ref|XP_005094619.1| | PREDICTED: T-complex protein 1 subunit alpha-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_505.1_17507.t1 | gi|156550171|ref|XP_001602512.1| | PREDICTED: T-complex protein 1 subunit alpha isoform X1 [Nasonia vitripennis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_505.1_17507.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_505.1_17507.t1 atggcggacaccacgaaaacgctcacggttggaggagatagaaccaccggacagtccgttagaacacagaatgttttggc agctagttccattgccaacatagtgaagagtagtttgggacctgtaggcctggataagatgctggtagatgacatagggg aagtgggggataggaccacatttgtggtaatgatcgccgcggagctgttaaagaacgcagatgaactggttaagtgtaag atccaccccacatctattatcggcggctatagactggcctgcaaagaggcttgtaaatacatccaggaacatctgacaat caacgtggaagagctcggtagagaatgtatactgaactgtgcgaaaactagcatgtccagtaaaatcattggagcagaat ctgaatttttttccaacatggtggtggacgccgccaatgcaataaagacatcagatggtaaagggggatttaaatatcct atcaaagctgtgaatgtactgaaggctcatgggaaaagctcaaaggaaagtctactcatccatggctatgcactcaactg tacagtcgcgtcacaagctatgacaaaacgggtgaataacgcaaagatagctctgttagacttcagtttacaaaaggcca aaatgaagatgggagtgcaagtccttatagaaaatcctgagcagctagatggcgtaaggcaaagagagtacgacatcaca aaagagaggatagagaaaattctagctactggagccaatgttgtcttgacaacgggaggcatcgatgatttatgtctgaa atatttcgtagaagctggtgccatggccgtcagaagatgtaaaaaagtggatctgaagagaattgcgaaagccacagggg gaacattggtgatgaccttggctaaccttgaaggtgaggaatcgtttgaggcatccatgttaggtcaggctgacgaggtt ctacaagagagaatatgcgacgatgaacttatccttgtcaaaggtccaaaagctagatcagctgcgtccatcgttcttag aggtgcgaatgacttcatgtgcgatgagatggaacgttctgtccatgatgccctttgtgtagtcaagcgtgtcctcgaat ctaaaacggttgttccgggaggtggagccgtagaatctgcgctatccatttacttagaaaacttcgctacttcgttggga tcacgagaacaacttgcaatagcagaatttgcccgttccttattagttatacccaaacagctggccgtcaacgcagctca ggattccactgacctggtagcaaagctccgtgcctatcataatatgtcacagaccaaacaggaacatagagatctcagat gggttggccttgacctttaccaaggtactgtgagagacaacaaaaaggccggagtgttggaacctgccatgtccaaaatt aagtcgcttaaattcgccacggaagcagcaatcacgatactcaggattgatgacatgatcaaattgattgaacaaaagca aggcggaaaaacgtaccaagacgcacttaatgccggagagttatag |
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Protein
| Protein ID | pfu_aug2.0_505.1_17507.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_505.1_17507.t1 MADTTKTLTVGGDRTTGQSVRTQNVLAASSIANIVKSSLGPVGLDKMLVDDIGEVGDRTTFVVMIAAELLKNADELVKCK IHPTSIIGGYRLACKEACKYIQEHLTINVEELGRECILNCAKTSMSSKIIGAESEFFSNMVVDAANAIKTSDGKGGFKYP IKAVNVLKAHGKSSKESLLIHGYALNCTVASQAMTKRVNNAKIALLDFSLQKAKMKMGVQVLIENPEQLDGVRQREYDIT KERIEKILATGANVVLTTGGIDDLCLKYFVEAGAMAVRRCKKVDLKRIAKATGGTLVMTLANLEGEESFEASMLGQADEV LQERICDDELILVKGPKARSAASIVLRGANDFMCDEMERSVHDALCVVKRVLESKTVVPGGGAVESALSIYLENFATSLG SREQLAIAEFARSLLVIPKQLAVNAAQDSTDLVAKLRAYHNMSQTKQEHRDLRWVGLDLYQGTVRDNKKAGVLEPAMSKI KSLKFATEAAITILRIDDMIKLIEQKQGGKTYQDALNAGEL |
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