Gene
| Gene Model ID | pfu_aug2.0_51.1_03499 |
|---|---|
| Locus | scaffold51.1 : 19146 ... 36676 : + |
| To GenomeBrowser | scaffold51.1:19146..36676 |
| Genes list of scaffold | scaffold51.1 |
| Synonym | pfu_aug1.0_786.1_65626 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| fibrinogen c domain-containing protein 1-like | GO:0002253 GO:0005488 GO:0007166 GO:0045087 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_51.1_03499.t1 | 2 | 1 | Fibrinogen_C | 83 | 292 | 0.0 | 345.4 | 0.0 | 0.0 | 222.2 |
| pfu_aug2.0_51.1_03499.t1 | 2 | 2 | Fibrinogen_C | 322 | 455 | 0.0 | 345.4 | 4.00001e-41 | 2.0e-37 | 129.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_51.1_03499.t1 | gi|260811209|ref|XP_002600315.1| | hypothetical protein BRAFLDRAFT_203922 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_51.1_03499.t1 | gi|260818274|ref|XP_002604308.1| | hypothetical protein BRAFLDRAFT_125263 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_51.1_03499.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_51.1_03499.t1 atggtggataaatctatttatatccctgcattgattattacattgattgtaatttgctatggaactcctgaactgcacaa aaatgcaaaaagtagtctgattgatcttataaagaagggacgtctgaacgttaaacctatttatggtgcagtcaaactgg ataagcctatcgctttctcggtaccggtcacatacaagtacctcattactgctggcaactcaaaggaaaagatctatagt ggttgtatggccatgaaaaatcaaaagagtggtgtttacaaagtacgaatcgccgatagatcgacaaaacaagtctactg cgatatgaccacggatggtgggggatggacgttacttgtattccgcttaaaggtttttcaaagaagagtggatggaacac agaacttcactcagaattacgacgcctatcgtagaggatttgggaatataaagaaagaattttggctagggaatgagata atacacaaactaacaaaggatggttcatgtgaacttcgtgtagatctggaggatttcgacaataaaacgagatatgcctt gtataaaggtttcaaagttggtgatgagagtagtggcttcaaactaacattaggatcatacagtggaaatgcaggtgatt caatgactcgtgtcaatggaatgaaattttctacatacgatagggatcaagatacttggagtggtggtcattgtgcggct agatacaaaggtggattttggtacgaatcctgtcattatgctaatccaaatggacattattttaaaggaaaacacaaatc atacgctgacgggatcaattggtaccattggcgaggacattattactcaatgaaacatacaaaaattatgtttcgctgca agatcttctttaactcatttgtgtcacacttatgccctttgccgtgtggagctcgtaaaaaagttccccgcgaggggttt gacagtaatgaactactacataaccttaccagcaatggttcatgtgaactacgtgtagatctggaggatttcgacaatga aaagagatatgccttgtataaaggcttcagagtaggtgatcaaaagagtggtttcaaattgacattagggtcttacagtg gagatgcaggtgattcacttactcgtgtcaaagggatgaaattttcaacatacgatagggatcaagatacttggagtgtg aactgtgcagctacttacaggggtggattttggcaccaatcctgtcatagcgctaatccaaatggacattatttcaatgg aaaacacaaatcttatgctaacggaattaattggtatcattggagagggtattactactccatgaaacatatcaagatga ttttcgatgccagtaactctaaaactgttctcagaaaataa |
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Protein
| Protein ID | pfu_aug2.0_51.1_03499.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_51.1_03499.t1 MVDKSIYIPALIITLIVICYGTPELHKNAKSSLIDLIKKGRLNVKPIYGAVKLDKPIAFSVPVTYKYLITAGNSKEKIYS GCMAMKNQKSGVYKVRIADRSTKQVYCDMTTDGGGWTLLVFRLKVFQRRVDGTQNFTQNYDAYRRGFGNIKKEFWLGNEI IHKLTKDGSCELRVDLEDFDNKTRYALYKGFKVGDESSGFKLTLGSYSGNAGDSMTRVNGMKFSTYDRDQDTWSGGHCAA RYKGGFWYESCHYANPNGHYFKGKHKSYADGINWYHWRGHYYSMKHTKIMFRCKIFFNSFVSHLCPLPCGARKKVPREGF DSNELLHNLTSNGSCELRVDLEDFDNEKRYALYKGFRVGDQKSGFKLTLGSYSGDAGDSLTRVKGMKFSTYDRDQDTWSV NCAATYRGGFWHQSCHSANPNGHYFNGKHKSYANGINWYHWRGYYYSMKHIKMIFDASNSKTVLRK |
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