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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_51.1_03508
Locus scaffold51.1 : 220590 ... 226268 : -
To GenomeBrowser scaffold51.1:220590..226268
Genes list of scaffold scaffold51.1
Synonym pfu_aug1.0_782.1_58243

Manual annotation
Annotation by Blast2GO
Annotation GO
beta-soluble nsf attachment isoform x3 GO:0005483 GO:0005774 GO:0006886 GO:0019905 GO:0031201 GO:0035494 GO:0045494 GO:0061025 GO:0070062

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_51.1_03508.t1 1 1 SNAP 1 82 9.6e-29 100.3 1.2e-31 1.0e-28 100.3
pfu_aug2.0_51.1_03508.t1 1 1 TPR_12 9 75 5.2e-08 32.7 7.6e-11 6.7e-08 32.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_51.1_03508.t1 gi|123701145|ref|NP_001074171.1| N-ethylmaleimide-sensitive factor attachment protein, beta [Danio rerio] 2.0e-38
pfu_aug2.0_51.1_03508.t1 gi|573875352|ref|XP_006626003.1| PREDICTED: beta-soluble NSF attachment protein-like isoform X3 [Lepisosteus oculatus] 3.0e-38
pfu_aug2.0_51.1_03508.t1 gi|701328353|ref|XP_009976512.1| PREDICTED: beta-soluble NSF attachment protein, partial [Tauraco erythrolophus] 4.0e-38
pfu_aug2.0_51.1_03508.t1 gi|557298456|ref|XP_006031503.1| PREDICTED: alpha-soluble NSF attachment protein [Alligator sinensis] 5.0e-38
pfu_aug2.0_51.1_03508.t1 gi|119630560|gb|EAX10155.1| N-ethylmaleimide-sensitive factor attachment protein, beta, isoform CRA_f, partial [Homo sapiens] 5.0e-38

Transcript
Transcript IDpfu_aug2.0_51.1_03508.t1
Definition-
>pfu_aug2.0_51.1_03508.t1
atgggtaaatttacaattgctgcaaaacatcacataacgatagcagaggtttatgagacagagttagtggacctggaaaa
agccataactcactacgagcaggctgctgattattataaaggagaggaatcaaacagttcagcaaataaatgtctggtga
aagttgcacagtattcagctcaactggaacaatatgacaaagcaatacagatttacgaagaggtacaccattataaagtg
acaaatttctga

Protein
Protein IDpfu_aug2.0_51.1_03508.t1
Definition-
>pfu_aug2.0_51.1_03508.t1
MGKFTIAAKHHITIAEVYETELVDLEKAITHYEQAADYYKGEESNSSANKCLVKVAQYSAQLEQYDKAIQIYEEVHHYKV
TNF

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