Gene
| Gene Model ID | pfu_aug2.0_51.1_03511 |
|---|---|
| Locus | scaffold51.1 : 281409 ... 292580 : + |
| To GenomeBrowser | scaffold51.1:281409..292580 |
| Genes list of scaffold | scaffold51.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| proto-oncogene tyrosine-protein kinase receptor ret- partial | GO:0000166 GO:0004672 GO:0006468 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_51.1_03511.t1 | 1 | 1 | Pkinase_Tyr | 3 | 76 | 8.8e-27 | 93.7 | 2.0e-30 | 1.0e-26 | 93.6 |
| pfu_aug2.0_51.1_03511.t1 | 1 | 1 | Pkinase | 4 | 75 | 1.5e-09 | 37.4 | 3.8e-13 | 1.9e-09 | 37.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_51.1_03511.t1 | gi|260803958|ref|XP_002596856.1| | hypothetical protein BRAFLDRAFT_237501 [Branchiostoma floridae] | 4.0e-30 |
| pfu_aug2.0_51.1_03511.t1 | gi|449690023|ref|XP_004212215.1| | 5.0e-23 | |
| pfu_aug2.0_51.1_03511.t1 | gi|449685891|ref|XP_002163040.2| | 7.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_51.1_03511.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_51.1_03511.t1 atgaaagagtttttgtcccaaaaaggttttgttcatcgggatctcgctgccagaaacgttcttgttggcgccgataagaa cgtgaaaataggagactttggactgacccggtttgtgtacaatgatcaaatctacattaacagaaatggcggcaaacttc ctcttaaatggatgtcagtggaggccatatttgaattaaccttttcaactgccagcgatgtagttgcatggctttgtaga agtttcggattcggaattccacctaactacccgcatatgttgacaacggaatggcgggaaactatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_51.1_03511.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_51.1_03511.t1 MKEFLSQKGFVHRDLAARNVLVGADKNVKIGDFGLTRFVYNDQIYINRNGGKLPLKWMSVEAIFELTFSTASDVVAWLCR SFGFGIPPNYPHMLTTEWRETM |
|