Gene
| Gene Model ID | pfu_aug2.0_51.1_03519 |
|---|---|
| Locus | scaffold51.1 : 455843 ... 473237 : + |
| To GenomeBrowser | scaffold51.1:455843..473237 |
| Genes list of scaffold | scaffold51.1 |
| Synonym | pfu_aug1.0_3794.1_08730 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_51.1_03519.t1 | 2 | 1 | CH | 72 | 172 | 1.1e-30 | 105.8 | 5.6e-21 | 4.2e-17 | 62.1 |
| pfu_aug2.0_51.1_03519.t1 | 2 | 1 | CAMSAP_CH | 87 | 108 | 1.4e-10 | 40.6 | 0.0026 | 19.0 | 4.9 |
| pfu_aug2.0_51.1_03519.t1 | 2 | 2 | CH | 186 | 234 | 1.1e-30 | 105.8 | 1.4e-14 | 1.0e-10 | 41.5 |
| pfu_aug2.0_51.1_03519.t1 | 2 | 2 | CAMSAP_CH | 192 | 236 | 1.4e-10 | 40.6 | 3.7e-12 | 2.8e-08 | 33.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_51.1_03519.t1 | gi|704318447|ref|XP_010168267.1| | PREDICTED: alpha-actinin-2-like, partial [Caprimulgus carolinensis] | 0.0 |
| pfu_aug2.0_51.1_03519.t1 | gi|662193004|ref|XP_008469384.1| | PREDICTED: alpha-actinin, sarcomeric-like [Diaphorina citri] | 0.0 |
| pfu_aug2.0_51.1_03519.t1 | gi|524880190|ref|XP_005096762.1| | PREDICTED: alpha-actinin, sarcomeric-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_51.1_03519.t1 | gi|694637980|ref|XP_009477516.1| | PREDICTED: alpha-actinin-2-like, partial [Pelecanus crispus] | 0.0 |
| pfu_aug2.0_51.1_03519.t1 | gi|746848740|ref|XP_011054787.1| | PREDICTED: alpha-actinin, sarcomeric isoform X1 [Acromyrmex echinatior] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_51.1_03519.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_51.1_03519.t1 atggatttaaaaaattctatggcatgcgtctgtgctctgctggctgaagataagtcacctgagaaatctgaccagctttc acatagggcagagccccgtcgtcaagtgaaaggagctagtgccgccatggagcaatacagtgatggatatatggaagaag aggaagaatgggatagagaaggtcttctggacccggcgtgggaaaagcaacagaaaaagacattcacagcttggtgtaat tcacatttaaggaaagcgggaacacaaatagaggacattgaaaatgactttcgaaatggtttaaaattgatgttactatt agaagtgatatcaggagaacagcttccaaagccagaccgaggaaaaatgaggttccacaaaatagccaatgtcaataaag ctttggattttattgccggcaaaggagtgcgcttagtttctattggtgctgaagaaattgtagatggcaatgtaaaaatg acattgggtatgatatggaccattatcctgaggtttgccatacaagatattactgtagaagaattaacagctaaagaagg cttattattatggtgtcaaaggaaaacagctccatacaaaaacgtcaatgtccaaaacttccatctcagctggaaggacg gtttggccttctgtgccttgatccatcggcatcgccccgagctgatcgattattacaaactctccagggtaattacacgg cgttatagtgtgatcctgatttggggtttgcgatga |
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Protein
| Protein ID | pfu_aug2.0_51.1_03519.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_51.1_03519.t1 MDLKNSMACVCALLAEDKSPEKSDQLSHRAEPRRQVKGASAAMEQYSDGYMEEEEEWDREGLLDPAWEKQQKKTFTAWCN SHLRKAGTQIEDIENDFRNGLKLMLLLEVISGEQLPKPDRGKMRFHKIANVNKALDFIAGKGVRLVSIGAEEIVDGNVKM TLGMIWTIILRFAIQDITVEELTAKEGLLLWCQRKTAPYKNVNVQNFHLSWKDGLAFCALIHRHRPELIDYYKLSRVITR RYSVILIWGLR |
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