Gene
| Gene Model ID | pfu_aug2.0_510.1_00827 |
|---|---|
| Locus | scaffold510.1 : 24856 ... 38383 : + |
| To GenomeBrowser | scaffold510.1:24856..38383 |
| Genes list of scaffold | scaffold510.1 |
| Synonym | pfu_aug1.0_5165.1_45126 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_510.1_00827.t1 | 2 | 1 | C1q | 16 | 49 | 5.4e-26 | 91.0 | 0.044 | 330.0 | 1.2 |
| pfu_aug2.0_510.1_00827.t1 | 2 | 2 | C1q | 73 | 195 | 5.4e-26 | 91.0 | 5.6e-29 | 4.1e-25 | 88.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_510.1_00827.t1 | gi|524877640|ref|XP_005095519.1| | PREDICTED: EMILIN-1-like [Aplysia californica] | 6.0e-14 |
| pfu_aug2.0_510.1_00827.t1 | gi|573901409|ref|XP_006638431.1| | PREDICTED: complement C1q-like protein 3-like [Lepisosteus oculatus] | 2.0e-13 |
| pfu_aug2.0_510.1_00827.t1 | gi|699237388|ref|XP_009862262.1| | PREDICTED: collagen alpha-2(VIII) chain-like [Ciona intestinalis] | 3.0e-12 |
| pfu_aug2.0_510.1_00827.t1 | gi|558147551|ref|XP_006093797.1| | PREDICTED: complement C1q-like protein 3 [Myotis lucifugus] | 2.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_510.1_00827.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_510.1_00827.t1 atggagacgattcatgtattgatgtgcgcatttctgatctttgtcaatgtgaccattgccaaggctacccaaaaggacct gagcctaatgttggtacagacactacagaatcaactacagacatgtatggaccagaatgcaatgcttgtccaacgtaact gtaatgctggaagaaacaaaactcacgtcattgagccaccgagaaggcattacatagcttttcatgcgggattaagtaac catgtaaaggaccttccacataactacaaacttgtgttcgacaagatctatctaaaccagggcaaggcctatgatccaca cactggtgtatttacttgcccaaatgacgggatctatgttttccactggactatccttacacaagcaggtaaacatttct atgccgaatatatgttgaatggaaacgttgttggacgatcacatcctaatgccgccactaccaaccgcgccgccagtagt tcagttgtgctgcagttgaagaaaggtgacaagacttggatagagccttcaggtggacacactggtcaatacgcgattgc aggatggtctttctactcaggatatagactttaa |
|
Protein
| Protein ID | pfu_aug2.0_510.1_00827.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_510.1_00827.t1 METIHVLMCAFLIFVNVTIAKATQKDLSLMLVQTLQNQLQTCMDQNAMLVQRNCNAGRNKTHVIEPPRRHYIAFHAGLSN HVKDLPHNYKLVFDKIYLNQGKAYDPHTGVFTCPNDGIYVFHWTILTQAGKHFYAEYMLNGNVVGRSHPNAATTNRAASS SVVLQLKKGDKTWIEPSGGHTGQYAIAGWSFYSGYRL |
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