Gene
| Gene Model ID | pfu_aug2.0_510.1_00831 |
|---|---|
| Locus | scaffold510.1 : 107855 ... 113552 : - |
| To GenomeBrowser | scaffold510.1:107855..113552 |
| Genes list of scaffold | scaffold510.1 |
| Synonym | pfu_aug1.0_18381.1_25721 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein cabeza | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_510.1_00831.t1 | 1 | 1 | RRM_1 | 18 | 96 | 4.8e-11 | 42.1 | 6.7e-14 | 2.5e-10 | 39.8 |
| pfu_aug2.0_510.1_00831.t1 | 1 | 1 | RRM_6 | 18 | 94 | 2.6e-08 | 33.7 | 1.1e-11 | 4.0e-08 | 33.1 |
| pfu_aug2.0_510.1_00831.t1 | 1 | 1 | RRM_5 | 57 | 100 | 5.8e-06 | 26.0 | 2.7e-09 | 9.8e-06 | 25.3 |
| pfu_aug2.0_510.1_00831.t1 | 1 | 1 | zf-RanBP | 155 | 185 | 1.5e-09 | 36.8 | 5.3e-13 | 2.0e-09 | 36.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_510.1_00831.t1 | gi|675862962|ref|XP_009017041.1| | hypothetical protein HELRODRAFT_186994 [Helobdella robusta] | 5.00264e-43 |
| pfu_aug2.0_510.1_00831.t1 | gi|642935129|ref|XP_008197899.1| | PREDICTED: RNA-binding protein cabeza [Tribolium castaneum] | 8.99634e-43 |
| pfu_aug2.0_510.1_00831.t1 | gi|270013385|gb|EFA09833.1| | hypothetical protein TcasGA2_TC011980 [Tribolium castaneum] | 6.00036e-42 |
| pfu_aug2.0_510.1_00831.t1 | gi|759033328|ref|XP_011351856.1| | PREDICTED: RNA-binding protein cabeza isoform X1 [Cerapachys biroi] | 9.99967e-42 |
| pfu_aug2.0_510.1_00831.t1 | gi|665795634|ref|XP_008545573.1| | PREDICTED: RNA-binding protein cabeza [Microplitis demolitor] | 3.00004e-41 |
Transcript
| Transcript ID | pfu_aug2.0_510.1_00831.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_510.1_00831.t1 atgataggaggcagcggtggcggggatgagatccaggttatggaggacaccatctttgtatctggactgtcagaggatat agatgaagatgctctcgtacaacagtttggcagcattggtgttatcaagaccgacaaaaggactggtaaacccaaagttt ggatctacaaggacaaaatgtctggaagacctaaaggggaggcaactgtaacttacgatgatacggaaacggcaaaggca gctatcaactggttcaatgagaaggactttaatggtaaaatcattaaagtagagatagcgacaaggaagatgaacaatag ttttggtggtggaagaggaggccgtggtgggggtagaggaggtggtggccgtggaggcggcggaggatttggccgtggtg gcggcggcggcggcggcggtggtggtggcggcggcggtggcggaaacagagatggtagttcccgtgctggtgattggacc tgccctgttgattcttgtggaaacaacaattttagctggcgtaatgaatgtaacagatgtggggaatcaagaccagatgg ggaaggcggtgacggaggtttccgtggtagaggtggcggccgtggtggtggtggatttggcggcggtcgcggtggaggtg gaatgagaggaggcagaggtggtggtggatatggcggtggccgtggaggtggtggatttggtggtggccgcggcnnnnnn nnnnnnnnnnnnnnnnnnttttcaggtttccgtggtagaggtggcggccgtggtggtggtggatttggcggcggtcgcgg tggaggtggaatgagaggaggcagaggtggtggtggatatggcggtggccgtggaggtggtggatttggtggtggccgcg gcggtggcggtagaggtggatttgatagaggtggacgtggaggtggtccaggaaaagacagaatgggagatcgtggagac aggagacccaagccgtattaa |
|
Protein
| Protein ID | pfu_aug2.0_510.1_00831.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_510.1_00831.t1 MIGGSGGGDEIQVMEDTIFVSGLSEDIDEDALVQQFGSIGVIKTDKRTGKPKVWIYKDKMSGRPKGEATVTYDDTETAKA AINWFNEKDFNGKIIKVEIATRKMNNSFGGGRGGRGGGRGGGGRGGGGGFGRGGGGGGGGGGGGGGGGNRDGSSRAGDWT CPVDSCGNNNFSWRNECNRCGESRPDGEGGDGGFRGRGGGRGGGGFGGGRGGGGMRGGRGGGGYGGGRGGGGFGGGRGXX XXXXXXFSGFRGRGGGRGGGGFGGGRGGGGMRGGRGGGGYGGGRGGGGFGGGRGGGGRGGFDRGGRGGGPGKDRMGDRGD RRPKPY |
|