Gene
| Gene Model ID | pfu_aug2.0_511.1_04267 |
|---|---|
| Locus | scaffold511.1 : 79038 ... 106085 : - |
| To GenomeBrowser | scaffold511.1:79038..106085 |
| Genes list of scaffold | scaffold511.1 |
| Synonym | pfu_aug1.0_4671.1_37940 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| regulator of nonsense transcripts 2 | GO:0000184 GO:0005515 GO:0005829 GO:0006406 GO:0035145 GO:0048513 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_511.1_04267.t1 | 4 | 1 | Upf2 | 240 | 272 | 3.5e-27 | 95.2 | 2.0 | 15000.0 | -25.0 |
| pfu_aug2.0_511.1_04267.t1 | 3 | 1 | MIF4G | 298 | 471 | 0.0 | 156.3 | 1.7e-12 | 1.3e-08 | 34.5 |
| pfu_aug2.0_511.1_04267.t1 | 4 | 2 | Upf2 | 547 | 602 | 3.5e-27 | 95.2 | 2.0 | 15000.0 | -8.9 |
| pfu_aug2.0_511.1_04267.t1 | 3 | 2 | MIF4G | 628 | 814 | 0.0 | 156.3 | 1.8e-30 | 1.3e-26 | 93.3 |
| pfu_aug2.0_511.1_04267.t1 | 3 | 3 | MIF4G | 835 | 950 | 0.0 | 156.3 | 4.0e-11 | 3.0e-07 | 30.0 |
| pfu_aug2.0_511.1_04267.t1 | 4 | 3 | Upf2 | 987 | 1022 | 3.5e-27 | 95.2 | 0.3 | 2300.0 | -1.8 |
| pfu_aug2.0_511.1_04267.t1 | 4 | 4 | Upf2 | 1019 | 1180 | 3.5e-27 | 95.2 | 4.7e-31 | 3.5e-27 | 95.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_511.1_04267.t1 | gi|676437444|ref|XP_009048206.1| | hypothetical protein LOTGIDRAFT_139905, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_511.1_04267.t1 | gi|524873233|ref|XP_005093367.1| | PREDICTED: regulator of nonsense transcripts 2-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_511.1_04267.t1 | gi|634833062|ref|XP_007933624.1| | PREDICTED: regulator of nonsense transcripts 2 [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_511.1_04267.t1 | gi|478502232|ref|XP_004425427.1| | PREDICTED: regulator of nonsense transcripts 2 isoform 2 [Ceratotherium simum simum] | 0.0 |
| pfu_aug2.0_511.1_04267.t1 | gi|478502230|ref|XP_004425426.1| | PREDICTED: regulator of nonsense transcripts 2 isoform 1 [Ceratotherium simum simum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_511.1_04267.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_511.1_04267.t1 atgagtgacagtaggtctggaaaagcaacaacagaaagtacctctaaaagtgaaagtagtagatcaactccacgtaaata tgatgacagaggaggaggtgctcgtggaaggtacgaggatgatcggtcttactctggacgaggtcgttctaactacgatg acgacagacctcgctataaagggcgatcaggatatgacgatagacctcgttccagccggggaaagtatgactcctatgat gatagagtaggagggtcgggaaggagtaaaggtatagatgatgatagatcgtatggtggtagaggaagatatgacgatga tgacaggtactatagtgataaacgaaggtcagatgtcaaggacagtccaactaagagtgtgaaaagtgaaagtaggagga ccacaggacatgaaggtcataaagataaaagtaggagtgagaattatagtagtgaaggggacagaggaagtagcaaaaaa tcaagtgacagaaacaccccaaggagtggtgacaaaggttcatctaggtcagataagccagccctgggatcacacaggag taacaaaggatcaggggatgccaaagataaatctcagaaattattaaaagaaaaagataaagtagagaaaaaggaatcac aaagttcaaaagataaatcggagacagatagaggttctaaaactacagcaggaaatatcaaggtgtcagaggtcaaatca gctgctgacttagaggctcagtggcagaaagaggaggaggaaaaaaagaaaaaggaggaagaagaaaagagaagacagga agagattaaaaggaaagaagaggaggaaaagagaaaagcagaggaggaagctgagagaaagatcgctgaggaaaagaaaa atctaactgaatctcagaaggatgctcttgttaaagacttcaatgggcttaatcttacaaaatatgtaggggaagctgct gcagcaataacagaagccaaactaaagatgtccgacataccatgtgctatacacatgtgctgtctcctacatcagaggta cccagacttctaccaagcattactggagaactggcaaaaatgtctgctaagcaagaaagatgaaaaaatcagtaatccta gtaagtaccgagtggatgtcagattttttgctgacttgttggctgttggagtatttcccctgaaggaggctgtaggagtc ttagctggccagcttagtctccttataaacaacgataaggaggaacataacaacctgaccattataacaagcttctgtaa acactgtggtgacgattacgtaggactgaccaaaggagaactttctacagagagaaaggagaactttgaaaaagttttaa tagcttaccaaaaattatatgaaaatactgccatattcgctgatctgttggatcaagacttaccagaatttcctgaagaa gattccagaaaagatgaagaagctggatttgacatcttcaatcctgagaaaagtgcagagtttcagtatgtgggagacag tacactgtttgaagatgaggatgctagaactttctatgagacgttacctgatctcaaatctttcattcctgggatttgtt ataaagacagtgaacaagccgccgggaaagatgaaacaaaggaatctgaggatgacttggtggaagacctagagaattta caaatagaagatgtggagagagagatggaaacagagcaacagatagcggaagtagagagtaaagaagcagagaaaaccca ggacggagagacctctgtaaaccaggaggaagaggtccgagatatagactatgacctactaccagaggcagatgaggatg attcagatacaggaagtcttatgaagatgcagtttgaagcctacgtacaatctctgcctaactgtgtcaacagggaactc atagataaggcagctgtagaattctgtatgaattttaacacgaaaggaaacaggaagaagctggtgcgagccttattcac agttcacagaaccaggtatgaccttttaccgttttactcccgtatggtagccatcttgtatccatgtatgcctgatgtgg ccaatgaccttgtacagttactcaagggagattttaggtggcatgtccgaaagaaggatcagattaacatagaatccaaa ctgaagactgtcagatttataggagaactggtcaaattcaaattgtttccaaagtctgaagctttacattgtttgaagat gctgatgtttgacttttcccatcataatatagagatggcgtgtgctttactagacacatgtggaaggttcctatacaggt ctcaggactcccatcatagaaccaaaatatacttagacattatgatgagaaagaagtcgtcattacatttggagagtcgg tacactacgatgatagagaatgccttctactacagtaatcccccagaaaccacacagatagtgaggaaagtacgacctcc gctacacgaatacatcaggaaactactgtacaaagacttgtctaaggtcaccacagaaaaggtgttaagacagctcagaa aactggattgggataatgcagagatggcgttctatgccactaaatccttgatagcagtatggaatgtaagatacaactca gtacattgtgcagctaacctgctggcaggacttgcgccctatcatgagcatgtagctatccaggttgtggatggtgtatt ggaggatatcagacttggcatggagagatattattggtttaaacacaaaaatgatatttggaatgagagccgtcctttcc ctattgatgtagagaacctaatgcaggacacatttgatgtaataagaccaaagtctaaactgatagcaagctttgatgat gctcaaaaggcagtagaaagcctagagaatgaatacaaggaaaaagttgctgcagtactacctattatcgacacagatca ggagggcagtgctagtgagacagaggatggtctggctaccatacaagaatcagaggaaactagtgcctctggggaggagt tgagtggacatgaggtagatgagagccaggatagcatggaggagtccagtcagaggagccgagaggaggatgagagtgaa ggagagaggaatggggaggaggaagaggaagatataatggaatcagcaggagaaatggaggatgaagatgagattatgtt actaacaggaggacctaaacacatgaagtgtgctgaggatgacgattttatggcagcttttgacaagatgatgaatgaca atatacaggctagaaccaatgaatcattgaaagttccccaacttgatatagctgttcccatgcatctcaaagacaagagt aaaaagacagcaacaaatgtaaacttgtatgtaactgaagaagaaatacctgtacagaatgagaaaaatgccatagagtt tgtactgatgaccaggaaagggaataaacaacagttcaccaatctgaatgtaccaatatctgccgagtttgcagccaaat acaaagaacgagaactggtcaaggcagagttgcaggacatggattaa |
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Protein
| Protein ID | pfu_aug2.0_511.1_04267.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_511.1_04267.t1 MSDSRSGKATTESTSKSESSRSTPRKYDDRGGGARGRYEDDRSYSGRGRSNYDDDRPRYKGRSGYDDRPRSSRGKYDSYD DRVGGSGRSKGIDDDRSYGGRGRYDDDDRYYSDKRRSDVKDSPTKSVKSESRRTTGHEGHKDKSRSENYSSEGDRGSSKK SSDRNTPRSGDKGSSRSDKPALGSHRSNKGSGDAKDKSQKLLKEKDKVEKKESQSSKDKSETDRGSKTTAGNIKVSEVKS AADLEAQWQKEEEEKKKKEEEEKRRQEEIKRKEEEEKRKAEEEAERKIAEEKKNLTESQKDALVKDFNGLNLTKYVGEAA AAITEAKLKMSDIPCAIHMCCLLHQRYPDFYQALLENWQKCLLSKKDEKISNPSKYRVDVRFFADLLAVGVFPLKEAVGV LAGQLSLLINNDKEEHNNLTIITSFCKHCGDDYVGLTKGELSTERKENFEKVLIAYQKLYENTAIFADLLDQDLPEFPEE DSRKDEEAGFDIFNPEKSAEFQYVGDSTLFEDEDARTFYETLPDLKSFIPGICYKDSEQAAGKDETKESEDDLVEDLENL QIEDVEREMETEQQIAEVESKEAEKTQDGETSVNQEEEVRDIDYDLLPEADEDDSDTGSLMKMQFEAYVQSLPNCVNREL IDKAAVEFCMNFNTKGNRKKLVRALFTVHRTRYDLLPFYSRMVAILYPCMPDVANDLVQLLKGDFRWHVRKKDQINIESK LKTVRFIGELVKFKLFPKSEALHCLKMLMFDFSHHNIEMACALLDTCGRFLYRSQDSHHRTKIYLDIMMRKKSSLHLESR YTTMIENAFYYSNPPETTQIVRKVRPPLHEYIRKLLYKDLSKVTTEKVLRQLRKLDWDNAEMAFYATKSLIAVWNVRYNS VHCAANLLAGLAPYHEHVAIQVVDGVLEDIRLGMERYYWFKHKNDIWNESRPFPIDVENLMQDTFDVIRPKSKLIASFDD AQKAVESLENEYKEKVAAVLPIIDTDQEGSASETEDGLATIQESEETSASGEELSGHEVDESQDSMEESSQRSREEDESE GERNGEEEEEDIMESAGEMEDEDEIMLLTGGPKHMKCAEDDDFMAAFDKMMNDNIQARTNESLKVPQLDIAVPMHLKDKS KKTATNVNLYVTEEEIPVQNEKNAIEFVLMTRKGNKQQFTNLNVPISAEFAAKYKERELVKAELQDMD |
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