Gene
| Gene Model ID | pfu_aug2.0_511.1_04273 |
|---|---|
| Locus | scaffold511.1 : 226480 ... 232504 : + |
| To GenomeBrowser | scaffold511.1:226480..232504 |
| Genes list of scaffold | scaffold511.1 |
| Synonym | pfu_aug1.0_22694.1_33281 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_511.1_04273.t1 | 2 | 1 | zf-C3HC4_3 | 16 | 67 | 2.0e-08 | 33.7 | 1.5e-11 | 2.0e-08 | 33.7 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 1 | zf-RING_2 | 16 | 62 | 2.7e-07 | 30.2 | 2.0e-10 | 2.7e-07 | 30.2 |
| pfu_aug2.0_511.1_04273.t1 | 2 | 1 | zf-C3HC4 | 17 | 61 | 1.6e-08 | 34.0 | 1.2e-11 | 1.6e-08 | 34.0 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 1 | zf-C3HC4_2 | 17 | 61 | 7.5e-08 | 32.2 | 5.6e-11 | 7.5e-08 | 32.2 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 1 | zf-RING_UBOX | 17 | 59 | 2.7e-07 | 30.1 | 2.0e-10 | 2.7e-07 | 30.1 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 1 | zf-RING_5 | 17 | 63 | 8.4e-07 | 28.6 | 6.3e-10 | 8.4e-07 | 28.6 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 1 | zf-C3HC4_4 | 17 | 61 | 6.0e-06 | 26.0 | 4.4e-09 | 6.0e-06 | 26.0 |
| pfu_aug2.0_511.1_04273.t1 | 2 | 2 | zf-C3HC4_3 | 100 | 133 | 2.0e-08 | 33.7 | 0.28 | 380.0 | 0.8 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 2 | zf-RING_2 | 101 | 166 | 2.7e-07 | 30.2 | 0.0073 | 9.8 | 6.0 |
| pfu_aug2.0_511.1_04273.t1 | 2 | 2 | zf-C3HC4 | 102 | 135 | 1.6e-08 | 34.0 | 2.7 | 3600.0 | -2.3 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 2 | zf-C3HC4_2 | 102 | 134 | 7.5e-08 | 32.2 | 0.15 | 200.0 | 2.1 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 2 | zf-RING_5 | 102 | 166 | 8.4e-07 | 28.6 | 0.017 | 23.0 | 4.7 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 2 | zf-RING_UBOX | 148 | 166 | 2.7e-07 | 30.1 | 1.1 | 1500.0 | -1.1 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 3 | zf-RING_UBOX | 174 | 189 | 2.7e-07 | 30.1 | 8.0 | 11000.0 | -3.8 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 3 | zf-RING_2 | 178 | 196 | 2.7e-07 | 30.2 | 0.43 | 580.0 | 0.4 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 3 | zf-C3HC4_2 | 181 | 196 | 7.5e-08 | 32.2 | 2.6 | 3500.0 | -1.9 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 3 | zf-RING_5 | 183 | 194 | 8.4e-07 | 28.6 | 6.0 | 8100.0 | -3.4 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 2 | zf-C3HC4_4 | 184 | 197 | 6.0e-06 | 26.0 | 0.56 | 760.0 | 0.1 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 3 | zf-C3HC4_4 | 341 | 353 | 6.0e-06 | 26.0 | 4.7 | 6300.0 | -2.9 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 1 | SGL | 469 | 526 | 9.1e-06 | 25.2 | 0.0088 | 12.0 | 5.1 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 2 | SGL | 575 | 610 | 9.1e-06 | 25.2 | 0.00018 | 0.24 | 10.7 |
| pfu_aug2.0_511.1_04273.t1 | 3 | 3 | SGL | 615 | 644 | 9.1e-06 | 25.2 | 0.055 | 74.0 | 2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_511.1_04273.t1 | gi|530657500|ref|XP_005314510.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM56 [Chrysemys picta bellii] | 3.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_511.1_04273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_511.1_04273.t1 atggccgaatcaaggattgaaacaggtatgtcggatgatcttattacctgtcctatttgctttgaaagatttaaatcgcc gaaatctttaccttgcctgcatacgtactgtaaagggtgtctccatacatacattgcgaaggctttagcggaaaacaaag cgaaagttgaatgtcccacttgtcgttccgccgttcgtgattttaccggacaggatgttaatcaatggattgagaacttg cccacaaactttattgtgaattctctgattgaactcacagaaattcaaaacggtaatagaaactgcgacatttgttcaca attggggaaaagtgcacatgcgacaaaatggtgtaacgaatgttcagaggtgtattgtgatgcatgctctcaaagtcata atcttcacaaaatgttcaggaagcatacattaatacaaataaaagatgctttgaaaggcatgtattttacagcggtagaa aactcttttgattgtcccgtccataaaaatcgcaaaattgagctatactgctctgatcatgctgaaccttgctgcctgac atgcatgacagttcatcacaggaaatgtgacaaagttactacactcgaagaagcggccgagaattttggggaggatccta cattcgtctcctttacaaaacgtatgaatgagttgacatctgaattaagaaatgagagaactcgtcatgataaagcagag aagaattttgcattacaaatctctcaggtcaaagatcaagctcagaagaagaagcaagaaatgataaaacatatcaaaaa gttgtataccaagtttgaaggggaaatccaagtgatagagaaacaacgtgagacagaggaccattccggaatccttactc aaaagatagtacagctagagctttttgtgaaaacactcgaaacgctacagtcaacatcatctgatttgtcactgtttctg gagttccataaaatgaagggcaaaaagaaagactttgaagaggttttggatcaatataaatcaagcaaaaagcaagaatc agttgaattcatatgtcacgaaaatgtagacaaattcgagtctgttgtttcttcttttggcaaagttcgcgtcgtcgatt ctattgcacaagcacaagcgtcgagatctgcaacaatagactacacttcaagcgctttgaaacaagttgtcaccatagtg gaagaaggggctaaatttagagatgccgtatgtattcgctcaggtacaatacttgcagtagatgagatgaagcattctgt ttgggcatatgatgatactggaaagctactagccaaatcgaacttaccgtgtagaccttgggctctcgctatcgtcgata caagcagtgtggtcgttacacttcgtgaagataaatctcttcaatatttcacatgcgatactagttcaaaaacattcata aaaagcaaaactatccaatttagtgaaacaccctgggcaattgattatgctgacaatcacttttttgttacatttaacaa aaaagtgaaaaaagtcaacattgatggaaaaatcgacgatgaaataaaaattccagaagcatcgagttctctttacggca tttcttacttcaatggcaaaatcatggttggggatcattctgaggaaggctactccttacacgtattacagatgggaaat aaactttcggtcaagtttcagaaatcatattcatccataccacttcccgtaggtatttctgttgatcgagacggaaatat atacatggtgggttgtagttcgaataacgtgatccagatagtacaaaacggagatttgatcagggagataattccatctt caaaaggaataaagtcaccggacggcattaacgtatccgctgatgggagaaaactaattttgacccatggcaataaaatc acagtctttgaatttatgtaa |
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Protein
| Protein ID | pfu_aug2.0_511.1_04273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_511.1_04273.t1 MAESRIETGMSDDLITCPICFERFKSPKSLPCLHTYCKGCLHTYIAKALAENKAKVECPTCRSAVRDFTGQDVNQWIENL PTNFIVNSLIELTEIQNGNRNCDICSQLGKSAHATKWCNECSEVYCDACSQSHNLHKMFRKHTLIQIKDALKGMYFTAVE NSFDCPVHKNRKIELYCSDHAEPCCLTCMTVHHRKCDKVTTLEEAAENFGEDPTFVSFTKRMNELTSELRNERTRHDKAE KNFALQISQVKDQAQKKKQEMIKHIKKLYTKFEGEIQVIEKQRETEDHSGILTQKIVQLELFVKTLETLQSTSSDLSLFL EFHKMKGKKKDFEEVLDQYKSSKKQESVEFICHENVDKFESVVSSFGKVRVVDSIAQAQASRSATIDYTSSALKQVVTIV EEGAKFRDAVCIRSGTILAVDEMKHSVWAYDDTGKLLAKSNLPCRPWALAIVDTSSVVVTLREDKSLQYFTCDTSSKTFI KSKTIQFSETPWAIDYADNHFFVTFNKKVKKVNIDGKIDDEIKIPEASSSLYGISYFNGKIMVGDHSEEGYSLHVLQMGN KLSVKFQKSYSSIPLPVGISVDRDGNIYMVGCSSNNVIQIVQNGDLIREIIPSSKGIKSPDGINVSADGRKLILTHGNKI TVFEFM |
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