Gene
| Gene Model ID | pfu_aug2.0_5110.1_02705 |
|---|---|
| Locus | scaffold5110.1 : 3014 ... 21975 : - |
| To GenomeBrowser | scaffold5110.1:3014..21975 |
| Genes list of scaffold | scaffold5110.1 |
| Synonym | pfu_aug1.0_8460.1_60436 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| t-box brain protein 1 | GO:0000979 GO:0003700 GO:0005634 GO:0007411 GO:0010092 GO:0010975 GO:0021902 GO:0030902 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5110.1_02705.t1 | 1 | 1 | T-box | 183 | 365 | 0.0 | 271.9 | 0.0 | 0.0 | 271.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5110.1_02705.t1 | gi|676484316|ref|XP_009063307.1| | hypothetical protein LOTGIDRAFT_129911, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_5110.1_02705.t1 | gi|259013438|ref|NP_001158462.1| | T-brain homeobox protein [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_5110.1_02705.t1 | gi|260788107|ref|XP_002589092.1| | hypothetical protein BRAFLDRAFT_75072 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_5110.1_02705.t1 | gi|602629328|ref|XP_007421591.1| | PREDICTED: T-box brain protein 1, partial [Python bivittatus] | 0.0 |
| pfu_aug2.0_5110.1_02705.t1 | gi|632946094|ref|XP_007888387.1| | PREDICTED: T-box brain protein 1 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_5110.1_02705.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5110.1_02705.t1 atggccaatgcaacaggatatcccgcatatcccgattctagactggaatcaacatatacagcaaatgcagagagatgttt ggaaagtgagggacactacactctccccagtctgaaaccttattactgtgaagggtatgcctatccagagggccaacaac agagttcatacacacatctgaccccggaaaattcaagtcccgagaaaagttatgaggaaacggaagatttgtcgccaaat gcagggtatcaatcgccgggtagtgggggaacacccagctatgcatgtctgcaacccgttacccaagtccatcgccaaga tgcccatgggtaccaagaatcgtacacccaacaggatacgtataagtacaacggctacatgccacaagttgatcccaata tgatgtactatgggggcaactataatgcgcaacccgcacagcatacgcagcagcagcagcaaatgcccagcgggaataat acgtcatgcgtatcgcccaatgggcaaagcaatggccaaggaagatttcagcaaaacaaagcctgcattcagctgtgtaa tgcagaactgtgggctcgattccatcaacatacgacagagatgatcataacaaaacaagggaggcggatgttccctacac tacagttcagcctggcgggactggatccgcacaaacagtacaacgtctttgtggatatgattttagcggatccaaaccac tggaaattccaaagcggaaaatgggttccatgtggacaagcggaacaattaccacaggttggtcgagtctacctccatcc tgattctccaagcagcggttcccattggatgaaacagtacattgtttttggaaagctgaaactaacaaataacagaaata acgatcagggccatatcgttctaaattccatgcacaagtaccagcctcgtattcatgttatcgaggtcggctcgtgtgga ccaaacgaccagaagaaccttcagacgcatgcgtttccggaaacacaatttatagcagttactgcttatcaaaacactga catcacacagctgaaaattgataataatccatttgcaaaaggatttcgagataattatgatggtcgcaatatagataaca gtacgcctcccaaccagggttacattccttttccatcttacggacaacatccttatcagaatggccattacggctctcag gaccccatgctaagggctaatcaaggcatcccgtatggcggaacattagaggcaaagttcagctatcaacgaaatctttc aaatacacatgtattccaaaacggacaggatcaagagaatgtgaaaatgtactacgacaacggcttcaactcaccgtatc gccaggtccctgttcacaatattaacaacaatcaacctcaaatcgagggcaacaacgaactttcacgatgtaaagttaag gaggaagttgtccttgaatcggaaattcctgtttcagtccctggtgattctgttggatccaattacagcgacaacgaacc gcagtgtcctgtcgtctgcaaggaggaagcggaggaaactgaacaggagaacccaagaaagcgcatgcgttacgagtcat ttccggtggagaatgacagtcattctatagatagagacacaatttcacagcaaaataatacaaactttcaagattttcag tctgtggaaaatttctatcagaattctgactttcaagatcattacaggaggcaaaatgaaaatctcagatgtcccttgcc cgaaactcaagtaaacacggtatactga |
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Protein
| Protein ID | pfu_aug2.0_5110.1_02705.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5110.1_02705.t1 MANATGYPAYPDSRLESTYTANAERCLESEGHYTLPSLKPYYCEGYAYPEGQQQSSYTHLTPENSSPEKSYEETEDLSPN AGYQSPGSGGTPSYACLQPVTQVHRQDAHGYQESYTQQDTYKYNGYMPQVDPNMMYYGGNYNAQPAQHTQQQQQMPSGNN TSCVSPNGQSNGQGRFQQNKACIQLCNAELWARFHQHTTEMIITKQGRRMFPTLQFSLAGLDPHKQYNVFVDMILADPNH WKFQSGKWVPCGQAEQLPQVGRVYLHPDSPSSGSHWMKQYIVFGKLKLTNNRNNDQGHIVLNSMHKYQPRIHVIEVGSCG PNDQKNLQTHAFPETQFIAVTAYQNTDITQLKIDNNPFAKGFRDNYDGRNIDNSTPPNQGYIPFPSYGQHPYQNGHYGSQ DPMLRANQGIPYGGTLEAKFSYQRNLSNTHVFQNGQDQENVKMYYDNGFNSPYRQVPVHNINNNQPQIEGNNELSRCKVK EEVVLESEIPVSVPGDSVGSNYSDNEPQCPVVCKEEAEETEQENPRKRMRYESFPVENDSHSIDRDTISQQNNTNFQDFQ SVENFYQNSDFQDHYRRQNENLRCPLPETQVNTVY |
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