Gene
| Gene Model ID | pfu_aug2.0_515.1_17511 |
|---|---|
| Locus | scaffold515.1 : 119675 ... 122748 : + |
| To GenomeBrowser | scaffold515.1:119675..122748 |
| Genes list of scaffold | scaffold515.1 |
| Synonym | pfu_aug1.0_15781.1_68900 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor sp5-like | GO:0003676 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_515.1_17511.t1 | 5 | 1 | zf-H2C2_2 | 228 | 234 | 2.7e-12 | 46.3 | 5.9 | 15000.0 | -3.4 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 1 | zf-C2H2 | 229 | 249 | 2.6e-15 | 55.7 | 2.5 | 6100.0 | -2.1 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 1 | zf-C2H2_4 | 229 | 249 | 7.9e-10 | 38.3 | 6.0 | 15000.0 | -4.8 |
| pfu_aug2.0_515.1_17511.t1 | 5 | 2 | zf-H2C2_2 | 244 | 259 | 2.7e-12 | 46.3 | 1.0 | 2500.0 | -1.0 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 2 | zf-C2H2 | 248 | 272 | 2.6e-15 | 55.7 | 6.5e-07 | 0.0016 | 18.6 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 2 | zf-C2H2_4 | 248 | 272 | 7.9e-10 | 38.3 | 9.4e-05 | 0.23 | 11.8 |
| pfu_aug2.0_515.1_17511.t1 | 5 | 3 | zf-H2C2_2 | 264 | 291 | 2.7e-12 | 46.3 | 6.0e-10 | 1.5e-06 | 28.2 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 3 | zf-C2H2 | 278 | 302 | 2.6e-15 | 55.7 | 5.3e-10 | 1.3e-06 | 28.3 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 3 | zf-C2H2_4 | 278 | 302 | 7.9e-10 | 38.3 | 2.2e-08 | 5.4e-05 | 23.2 |
| pfu_aug2.0_515.1_17511.t1 | 5 | 4 | zf-H2C2_2 | 295 | 317 | 2.7e-12 | 46.3 | 3.8e-10 | 9.3e-07 | 28.8 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 4 | zf-C2H2 | 308 | 330 | 2.6e-15 | 55.7 | 2.0e-08 | 4.9e-05 | 23.4 |
| pfu_aug2.0_515.1_17511.t1 | 4 | 4 | zf-C2H2_4 | 310 | 330 | 7.9e-10 | 38.3 | 3.4e-07 | 0.00084 | 19.5 |
| pfu_aug2.0_515.1_17511.t1 | 5 | 5 | zf-H2C2_2 | 322 | 334 | 2.7e-12 | 46.3 | 0.0032 | 7.8 | 6.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_515.1_17511.t1 | gi|557020766|ref|XP_006010698.1| | PREDICTED: transcription factor Sp5-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_515.1_17511.t1 | gi|573897701|ref|XP_006636586.1| | PREDICTED: transcription factor Sp5-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_515.1_17511.t1 | gi|556946272|ref|XP_005986386.1| | PREDICTED: transcription factor Sp5-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_515.1_17511.t1 | gi|259013470|ref|NP_001158478.1| | buttonhead-like protein [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_515.1_17511.t1 | gi|166157959|ref|NP_001107389.1| | Sp5 transcription factor-like [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_515.1_17511.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_515.1_17511.t1 atggaatatccccaacgggagaatatagacactaggctgcttccattcggacatggaaacctccctgtcagcaatctaca acgtcccctggggcacgaggttgtacgcccaactcccaaccaccctcggcaaagatggtcgggaaattgtcacatacaag atagagcttttcacgtttcggaaataccatcttcacctagctacttgcgctctcctttgatgtctttagagcaaattcgg actcaacaaaatgagattaatgcaatggaattaatcagaaaggaacaattcagttacgaagctcacaatgcgagactttt acgagaaaatattttgattgccgaaagatcgttcgttcctactccgtctccattaatttccggacatgcgcagtcgctga atgggcctacatcgccactttctcctcttgtaccacaatcagtaaattcggacgttcatgctcaaaaacagatctctcca atacccgcaacggaagcggaaacaccttggtggagtgtgacgtcaccagtaagtcctataactcgtgatgtcaaactgga atttggtgtgccgcatcagatgatgtacggacaacgaaatgaaatacattatagagcacaattagcctctatgtttcagg gcgggaaacagttgatagcacctacgcgcaggtgccgaaggtgcaggtgcccgaactgcttaaattcgaaaaattcagac aatccgtcgaagaaaaagcaacatatttgtcatatacccggatgtggaaaggtttacgggaaaacatcgcatctgaaagc gcatttgaggtggcattcgggtgaaagacctttcgtctgcaactggctattttgcgggaaaagttttacgcgctcagacg aactacaacgccatttgcgaacgcatactggtgaaaaacgattcggctgtaatgagtgcgggaaaagattcatgcgcagt gatcatctaagtaagcatatgaagacgcatgaaaataaaaagcagaaatcgaacgaacctgaatcaccggaagcggaaac atcaagcacaacggacgatgaagatgaagaaatcgatgttgatggattagatgacgaatcagacgattgtttcgatgaca gcgtttctattgaatcgtcagatttgagacttgactctcaggttcaataa |
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Protein
| Protein ID | pfu_aug2.0_515.1_17511.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_515.1_17511.t1 MEYPQRENIDTRLLPFGHGNLPVSNLQRPLGHEVVRPTPNHPRQRWSGNCHIQDRAFHVSEIPSSPSYLRSPLMSLEQIR TQQNEINAMELIRKEQFSYEAHNARLLRENILIAERSFVPTPSPLISGHAQSLNGPTSPLSPLVPQSVNSDVHAQKQISP IPATEAETPWWSVTSPVSPITRDVKLEFGVPHQMMYGQRNEIHYRAQLASMFQGGKQLIAPTRRCRRCRCPNCLNSKNSD NPSKKKQHICHIPGCGKVYGKTSHLKAHLRWHSGERPFVCNWLFCGKSFTRSDELQRHLRTHTGEKRFGCNECGKRFMRS DHLSKHMKTHENKKQKSNEPESPEAETSSTTDDEDEEIDVDGLDDESDDCFDDSVSIESSDLRLDSQVQ |
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