Gene
| Gene Model ID | pfu_aug2.0_515.1_17516 |
|---|---|
| Locus | scaffold515.1 : 260095 ... 297565 : + |
| To GenomeBrowser | scaffold515.1:260095..297565 |
| Genes list of scaffold | scaffold515.1 |
| Synonym | pfu_aug1.0_13074.1_39435 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_515.1_17516.t2 | 5 | 1 | RNase_T | 232 | 263 | 7.8e-21 | 75.0 | 2.0 | 9700.0 | -3.4 |
| pfu_aug2.0_515.1_17516.t2 | 5 | 2 | RNase_T | 274 | 421 | 7.8e-21 | 75.0 | 1.4e-23 | 6.9e-20 | 71.9 |
| pfu_aug2.0_515.1_17516.t2 | 5 | 3 | RNase_T | 499 | 543 | 7.8e-21 | 75.0 | 1.0 | 5000.0 | -2.4 |
| pfu_aug2.0_515.1_17516.t2 | 5 | 4 | RNase_T | 578 | 609 | 7.8e-21 | 75.0 | 1.2 | 5700.0 | -2.6 |
| pfu_aug2.0_515.1_17516.t2 | 5 | 5 | RNase_T | 633 | 636 | 7.8e-21 | 75.0 | 0.57 | 2800.0 | -1.6 |
Transcript
| Transcript ID | pfu_aug2.0_515.1_17516.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_515.1_17516.t1 atgtcaatttctcagacatcatcatcttctatgacaaaaaaagagaagagaatagattcaaagaaaaggaaagcagaagc ttttcttgctttggtgtcacaagaagaagatgacaaaaagtcttttgataaggtgaagaaggaagtagatgatgatagcg attctgaggaagctgtgccgagtaaagttcagaaatcctctgacaagtcccaaggacctttgacgtcgaaagaggaagct tttaaaagagcacaggatagtttgaataggctgaaggaggcaaataaaacatcagctcagaaaggggaggaggaattagc caggctgaggcaaatgattagagatagacagaagtcatctatggaaaaacccaagttgtatttaacattagatgagttag cctatcagaatggacgtattttatctcaaactgaagttacaccagagttaccccctcttttcatgttagatcttcagagt ctggctctgcttggattacaagggaatttatgcagcttaaaaccaaggtggtgccgtgtactgagactcactaaagtggc aggcgtcgtgatgctggtgatggacgaagtcagtgcaactgaactaaagaactacccagagagctttcaacctatcaaat ctgaatttgaaatgtcagtagagatggtgtccccagctcagtatggaagcacagtggctgaagatctttttcatgtacca ttgagtatgaaacaaatgaaatcactcaataattcatacaagaacttcaaatacaccaataagaaatactctactgtcac cagccaaagccccatgtttggacttgactgtgaaatgtgtatgactactgcaaaacgaccagaactaacttgggtgtcag tgataaatgaaaacctggaaactgtctataatacattagtgaagccatacaacaaggtcaccaactatttgacaaggtgg agtgggataaccaaagccttgttggatccggtgaacaaacgtttagaagaggtacagagagacttacagaagttgctacc cccagacgccatactgtgtggacaatccttacagtgtgatctcctagctctacagatgttccacccctatgtgatagata ccagtgtgatatacaatttatcagggcaacatggcattaaaccaagtctcaagattctaacgcaaagattcctagggcaa actatccaggagagtgaggagggccacagtcctgtagaggatgccaaggcaaccctggaacttgtacagctaaaactgaa aaattcaatagaatatggagatgttagacttggttctgttgtatacccccaatttgatgctgaggggaactttatcaagc cagctgagaatggtgctaaaagtgaaagtgacaataatgctagtgacgctgtagttagtgacagtgcttttaacattagt gatagtggttgtttgaaccaagattctagttttaccaaggacagcgaagacaaaagcagtgataaagcggtgacaggaat caaatacttccttaataacagagaccagactgttgctcagcgcagggcattctttcagagggaaggggactttggatacc aggatttcttcaaactggttagaaatcagaaaaagacagctgctttagtagcggacaaagaagtagtcgattattttggg aggaatgacatagcttccatggaatcagactctgataagacaacaaaatcgctaacaaaatcctacgtacagtatcatga ctttgtctacagttccttcccatcattcaaacagtgcaatacaaaagaaatgaccgaagaaaacaagaagaaacttcttt ggaagatgagcaggaaggttgtgaaggtattaaaacatgtgagacctaactgtatagtgatggtagtgttaccaggaagg actgatagtgaaggggatcataatgctgtatgtctatgcaaagttacataa |
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| Transcript ID | pfu_aug2.0_515.1_17516.t2 |
| Definition | - |
>pfu_aug2.0_515.1_17516.t2 atgtcaatttctcagacatcatcatcttctatgacaaaaaaagagaagagaatagattcaaagaaaaggaaagcagaagc ttttcttgctttggtgtcacaagaagaagatgacaaaaagtcttttgataaggtgaagaaggaagtagatgatgatagcg attctgaggaagctgtgccgagtaaagttcagaaatcctctgacaagtcccaaggacctttgacgtcgaaagaggaagct tttaaaagagcacaggatagtttgaataggctgaaggaggcaaataaaacatcagctcagaaaggggaggaggaattagc caggctgaggcaaatgattagagatagacagaagtcatctatggaaaaacccaagttgtatttaacattagatgagttag cctatcagaatggacgtattttatctcaaactgaagttacaccagagttaccccctcttttcatgttagatcttcagagt ctggctctgcttggattacaagggaatttatgcagcttaaaaccaaggtggtgccgtgtactgagactcactaaagtggc aggcgtcgtgatgctggtgatggacgaagtcagtgcaactgaactaaagaactacccagagagctttcaacctatcaaat ctgaatttgaaatgtcagtagagatggtgtccccagctcagtatggaagcacagtggctgaagatctttttcatgtacca ttgagtatgaaacaaatgaaatcactcaataattcatacaagaacttcaaatacaccaataagaaatactctactgtcac cagccaaagccccatgtttggacttgactgtgaaatgtgtatgactactgcaaaacgaccagaactaacttgggtgtcag tgataaatgaaaacctggaaactgtctataatacattagtgaagccatacaacaaggtcaccaactatttgacaaggtgg agtgggataaccaaagccttgttggatccggtgaacaaacgtttagaagaggtacagagagacttacagaagttgctacc cccagacgccatactgtgtggacaatccttacagtgtgatctcctagctctacagatgttccacccctatgtgatagata ccagtgtgatatacaatttatcagggcaacatggcattaaaccaagtctcaagattctaacgcaaagattcctagggcaa actatccaggagagtgaggagggccacagtcctgtagaggatgccaaggcaaccctggaacttgtacagctaaaactgaa aaattcaatagaatatggagatgttagacttggttctgttgtatacccccaatttgatgctgaggggaactttatcaagc cagctgagaatggtgctaaaagtgaaagtgacaataatgctagtgacgctgtagttagtgacagtgcttttaacattagt gatagtggttgtttgaaccaagattctagttttaccaaggacagcgaagacaaaagcagtgataaagcggtgacaggaat caaatacttccttaataacagagaccagactgttgctcagcgcagggcattctttcagagggaaggggactttggatacc aggatttcttcaaactggttagaaatcagaaaaagacagctgctttagtagcggacaaagaagtagtcgattattttggg aggaatgacatagcttccatggaatcagactctgataagacaacaaaatcgctaacaaaatcctacgtacagtatcatga ctttgtctacagttccttcccatcattcaaacagtgcaatacaaaagaaatgaccgaagaaaacaagaaggttttttcga taaaatctggtatgataattatacatcatgttcctattttgacagaaacttctttggaagatgagcaggaaggttgtgaa gctgctttagtagcggacaaagaagtagtcgattattttgggaggaatgacatagcttccatggaatcagactctgataa gacaacaaaatcgctaacaaaatcctacgtacagtatcatgactttgtctacagttccttcccatcattcaaacagtgca atacaaaagaaatgaccgaagaaaacaagaagaaacttctttggaagatgagcaggaaggttgtgaaggtattaaaacat gtgagacctaactgtatagtgatggtagtgttaccaggaaggactgatagtgaaggggatcataatgctgtatgtctatg caaagttacataa |
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Protein
| Protein ID | pfu_aug2.0_515.1_17516.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_515.1_17516.t1 MSISQTSSSSMTKKEKRIDSKKRKAEAFLALVSQEEDDKKSFDKVKKEVDDDSDSEEAVPSKVQKSSDKSQGPLTSKEEA FKRAQDSLNRLKEANKTSAQKGEEELARLRQMIRDRQKSSMEKPKLYLTLDELAYQNGRILSQTEVTPELPPLFMLDLQS LALLGLQGNLCSLKPRWCRVLRLTKVAGVVMLVMDEVSATELKNYPESFQPIKSEFEMSVEMVSPAQYGSTVAEDLFHVP LSMKQMKSLNNSYKNFKYTNKKYSTVTSQSPMFGLDCEMCMTTAKRPELTWVSVINENLETVYNTLVKPYNKVTNYLTRW SGITKALLDPVNKRLEEVQRDLQKLLPPDAILCGQSLQCDLLALQMFHPYVIDTSVIYNLSGQHGIKPSLKILTQRFLGQ TIQESEEGHSPVEDAKATLELVQLKLKNSIEYGDVRLGSVVYPQFDAEGNFIKPAENGAKSESDNNASDAVVSDSAFNIS DSGCLNQDSSFTKDSEDKSSDKAVTGIKYFLNNRDQTVAQRRAFFQREGDFGYQDFFKLVRNQKKTAALVADKEVVDYFG RNDIASMESDSDKTTKSLTKSYVQYHDFVYSSFPSFKQCNTKEMTEENKKKLLWKMSRKVVKVLKHVRPNCIVMVVLPGR TDSEGDHNAVCLCKVT |
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| Protein ID | pfu_aug2.0_515.1_17516.t2 |
| Definition | - |
>pfu_aug2.0_515.1_17516.t2 MSISQTSSSSMTKKEKRIDSKKRKAEAFLALVSQEEDDKKSFDKVKKEVDDDSDSEEAVPSKVQKSSDKSQGPLTSKEEA FKRAQDSLNRLKEANKTSAQKGEEELARLRQMIRDRQKSSMEKPKLYLTLDELAYQNGRILSQTEVTPELPPLFMLDLQS LALLGLQGNLCSLKPRWCRVLRLTKVAGVVMLVMDEVSATELKNYPESFQPIKSEFEMSVEMVSPAQYGSTVAEDLFHVP LSMKQMKSLNNSYKNFKYTNKKYSTVTSQSPMFGLDCEMCMTTAKRPELTWVSVINENLETVYNTLVKPYNKVTNYLTRW SGITKALLDPVNKRLEEVQRDLQKLLPPDAILCGQSLQCDLLALQMFHPYVIDTSVIYNLSGQHGIKPSLKILTQRFLGQ TIQESEEGHSPVEDAKATLELVQLKLKNSIEYGDVRLGSVVYPQFDAEGNFIKPAENGAKSESDNNASDAVVSDSAFNIS DSGCLNQDSSFTKDSEDKSSDKAVTGIKYFLNNRDQTVAQRRAFFQREGDFGYQDFFKLVRNQKKTAALVADKEVVDYFG RNDIASMESDSDKTTKSLTKSYVQYHDFVYSSFPSFKQCNTKEMTEENKKVFSIKSGMIIIHHVPILTETSLEDEQEGCE AALVADKEVVDYFGRNDIASMESDSDKTTKSLTKSYVQYHDFVYSSFPSFKQCNTKEMTEENKKKLLWKMSRKVVKVLKH VRPNCIVMVVLPGRTDSEGDHNAVCLCKVT |
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