Gene
| Gene Model ID | pfu_aug2.0_5159.1_32762 |
|---|---|
| Locus | scaffold5159.1 : 8772 ... 13565 : - |
| To GenomeBrowser | scaffold5159.1:8772..13565 |
| Genes list of scaffold | scaffold5159.1 |
| Synonym | pfu_aug1.0_3667.1_16147 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5159.1_32762.t1 | 3 | 1 | TSP_1 | 250 | 267 | 2.2e-06 | 27.6 | 3.0 | 15000.0 | -5.4 |
| pfu_aug2.0_5159.1_32762.t1 | 3 | 2 | TSP_1 | 288 | 336 | 2.2e-06 | 27.6 | 4.4e-10 | 2.2e-06 | 27.6 |
| pfu_aug2.0_5159.1_32762.t1 | 3 | 3 | TSP_1 | 653 | 667 | 2.2e-06 | 27.6 | 0.61 | 3000.0 | -1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5159.1_32762.t1 | gi|543377948|ref|XP_005532177.1| | PREDICTED: SCO-spondin-like [Pseudopodoces humilis] | 2.0e-06 |
| pfu_aug2.0_5159.1_32762.t1 | gi|585664237|ref|XP_006887346.1| | PREDICTED: SCO-spondin [Elephantulus edwardii] | 4.0e-06 |
| pfu_aug2.0_5159.1_32762.t1 | gi|688568421|ref|XP_009302346.1| | PREDICTED: complement component C7 isoform X2 [Danio rerio] | 1.0e-05 |
| pfu_aug2.0_5159.1_32762.t1 | gi|326670114|ref|XP_690946.4| | PREDICTED: complement component C7 isoform X1 [Danio rerio] | 1.0e-05 |
Transcript
| Transcript ID | pfu_aug2.0_5159.1_32762.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5159.1_32762.t1 atgttagtcgtggcattggtatgttccattgttcacagtgaccaatctggtaattgttcactcagggaagatacaaggaa tctagcagaggtagtggcttttatcataaaggaaacagcaaacgtccagaagatggctccccttgtcaacaaagacattc taaaagtaatcaatgatagagatcaaatgatgcgcggggtgtatttagtccttaacagattaaaggcagctactaccaag ctgaaagaagcggaaagacttcttaaaatcgacaatgggattcaaaaatggctattcggactaaaatctctctttatggg tagatttccatttggaggcgtctcaaatcggccgcttatattccaaatgatagaacatctttccaggaaacatggttgct ccgacgattacaagtcacttctagatggtctttggagaaacatgatcttaagtcaatgtcaaggatttatattatgggca catgctttgcaaataaagggagagagtgtaagtttcataaagcaatattataaatcgacgatttccacggaggtaagcat aatcgctattgacacttgtgatcttgctatcgataatgctatcaacttaaaatgtactgatggtttctactgcatgcggc attccgaatttaaagttcaatgcaaaccgaactactatatctcctttaaacccaagacagaattcattacatgtgaaggg gaaacaccaaaatgtcttccctgccactgcaatgaccagggctcgacacagtcggaatgcaaggacgaaacaggaatgtg cttatgcgacaaaaaccactactttggactgaaatgccaagacagggactgtcgttggacatcttggagcacatggggtg cttgcagtaaggcgtgtgggtacggtttaagttatagaagaagggcacatgcaatggataagaaaggaattggcaaattg tgtgatggtgaaaacgagaaatcgaagacatgcttccacaaatgttgtgacaagaaataccattgtcaaaaggatgggaa gtgtatttcggagagggcaaggtgtaatgcaataaaagactgtggcagcggagaagatgaatctaaatgcgatgaatgta atggttaccaaacacatttttattcggtatatcatgtaatctaccttgacggacataatgttgcatgcccaaatgtcaac acagcaatacaatcatttaaaattaaaaccaatgaagataaaagcaagctgaggtattcatacgacttctgtcaaatgaa gaaagatgtttgtacgagagtatttactaaaactgaagcatctaatcacccaaaaggttacttcacggaattatcacccc ttccaatccaatgtaaacacgatgggtttctgcaacaatttgttttgaggagacctacgtcgacaaccataaatcatcat atcacctgctgcgagatcaaatcgacattgaaaaagaaaggcactggtcggcatggtcaagttgtaaatgtggaccaggt aaaaggaaaactcgcaccaggccgattacacagaaaagaactggttcaggtgaggcatgtgaagaaacctcacaggctga agattgcaatatcaaatgtcagtgtaaagagggagaaagcggttataattgtgagcacaaaaattgctaagtttcagctt ggagtgaatggagtaaatgccaagatccgagaatatctcatttttacaaaggcgatgacgaaaaatatgaagaaaagagt cgtcaaagaactgttactcgagccagaccaaacaatggcaaggcatgtccaactctcagagagaaaaagttatgcaaaga accgctttgcattgaaatggagaccccaaaactatatgggtgaaactcattcttgtctttttgtttgtttatcatcaaga aaagaaaggaggggatctccaacaacactaggttgcagcacccacagcaaaacccaaaacaccaaatgcaaaaaacaaca acacagaacagacacccacagaaagagacgcaaaagggacaaggaacaccaactcacaccaactcacaccatagaaacat taacaaatccaatcacatattactttatacacaaataa |
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Protein
| Protein ID | pfu_aug2.0_5159.1_32762.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5159.1_32762.t1 MLVVALVCSIVHSDQSGNCSLREDTRNLAEVVAFIIKETANVQKMAPLVNKDILKVINDRDQMMRGVYLVLNRLKAATTK LKEAERLLKIDNGIQKWLFGLKSLFMGRFPFGGVSNRPLIFQMIEHLSRKHGCSDDYKSLLDGLWRNMILSQCQGFILWA HALQIKGESVSFIKQYYKSTISTEVSIIAIDTCDLAIDNAINLKCTDGFYCMRHSEFKVQCKPNYYISFKPKTEFITCEG ETPKCLPCHCNDQGSTQSECKDETGMCLCDKNHYFGLKCQDRDCRWTSWSTWGACSKACGYGLSYRRRAHAMDKKGIGKL CDGENEKSKTCFHKCCDKKYHCQKDGKCISERARCNAIKDCGSGEDESKCDECNGYQTHFYSVYHVIYLDGHNVACPNVN TAIQSFKIKTNEDKSKLRYSYDFCQMKKDVCTRVFTKTEASNHPKGYFTELSPLPIQCKHDGFLQQFVLRRPTSTTINHH ITCCEIKSTLKKKGTGRHGQVVNVDQVKGKLAPGRLHRKELVQVRHVKKPHRLKIAISNVSVKREKAVIIVSTKIAKFQL GVNGVNAKIREYLIFTKAMTKNMKKRVVKELLLEPDQTMARHVQLSERKSYAKNRFALKWRPQNYMGETHSCLFVCLSSR KERRGSPTTLGCSTHSKTQNTKCKKQQHRTDTHRKRRKRDKEHQLTPTHTIETLTNPITYYFIHK |
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