Gene
| Gene Model ID | pfu_aug2.0_516.1_20858 |
|---|---|
| Locus | scaffold516.1 : 127436 ... 129658 : + |
| To GenomeBrowser | scaffold516.1:127436..129658 |
| Genes list of scaffold | scaffold516.1 |
| Synonym | pfu_aug1.0_377.1_07504 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_516.1_20858.t1 | 1 | 1 | HMG_box_2 | 34 | 103 | 2.0e-09 | 37.7 | 8.1e-13 | 4.0e-09 | 36.7 |
| pfu_aug2.0_516.1_20858.t1 | 2 | 1 | HMG_box | 36 | 104 | 2.4e-25 | 88.5 | 3.3e-28 | 1.6e-24 | 85.8 |
| pfu_aug2.0_516.1_20858.t1 | 2 | 2 | HMG_box | 304 | 318 | 2.4e-25 | 88.5 | 0.81 | 4000.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_516.1_20858.t1 | gi|241811172|ref|XP_002416447.1| | HMG-box transcription factor, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_516.1_20858.t1 | gi|259013518|ref|NP_001158501.1| | sox11-like protein [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_516.1_20858.t1 | gi|72164888|ref|XP_798084.1| | PREDICTED: transcription factor SOX-4-like [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_516.1_20858.t1 | gi|755934164|ref|XP_011314883.1| | PREDICTED: transcription factor SOX-4-like [Fopius arisanus] | 0.0 |
| pfu_aug2.0_516.1_20858.t1 | gi|383863867|ref|XP_003707401.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_516.1_20858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_516.1_20858.t1 atgatggtaccacaaaattgtattccatttggatctcaatccattgataagaacacttctactccttacacggacgctac tcagtgcaagaaacagtcaaatcatgtgaaacgacctatgaacgcatttatggtttggtcgcagatcgaacgaaggaaaa tatcggaagtatctcccgatatgcacaacgcagagatcagcaaacgccttggtaaacgatggaagactctaaacgagtta gacagacaaccgtacattgaggaggctgagaggttaaggttgctgcacatgcaggagtacccagactacaagtacagacc gaggaagaaggctaagcctgtagtgaaatcagactgtggaaaagttaccaaaccttcacataaaagccgtacggaccgac acaaacacaaatccgccgaagtgaaaagcttcctggaggaggctgcattagaggtcagtgataacagcagacttaaactc aaacttacaattgacaaaaagttcaaagacagtattaaagccagtcgacatgtgcctgtgtcttcttgtcaactaacccc acccgctaaagtgccgtccagcccctccgtatactcccctccgactcccgaatctaccagtttctaccccgaggagatct atgacactcctgccgcctctcccgttgaggaaacctgcattaaacgagagcctcaaactcagggtaataatcagggagac ggatcatcactggcggatttggataatcttaccgatgtgttacaaataccagcgtggcaattcgataacttggacttgag taaactaggtgccgatttgtatgactttcccaattttgacatgcataataataatgtcacaaaacccgtgtccagtgcat cctccacctcaagtaacggatcacattttgaattccccgattactccactccagaagtctcggaaatggttggtctggaa tccgagtggttggacatttccgtgcttggctcaatagctgctcattga |
|
Protein
| Protein ID | pfu_aug2.0_516.1_20858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_516.1_20858.t1 MMVPQNCIPFGSQSIDKNTSTPYTDATQCKKQSNHVKRPMNAFMVWSQIERRKISEVSPDMHNAEISKRLGKRWKTLNEL DRQPYIEEAERLRLLHMQEYPDYKYRPRKKAKPVVKSDCGKVTKPSHKSRTDRHKHKSAEVKSFLEEAALEVSDNSRLKL KLTIDKKFKDSIKASRHVPVSSCQLTPPAKVPSSPSVYSPPTPESTSFYPEEIYDTPAASPVEETCIKREPQTQGNNQGD GSSLADLDNLTDVLQIPAWQFDNLDLSKLGADLYDFPNFDMHNNNVTKPVSSASSTSSNGSHFEFPDYSTPEVSEMVGLE SEWLDISVLGSIAAH |
|