Gene
| Gene Model ID | pfu_aug2.0_516.1_20862 |
|---|---|
| Locus | scaffold516.1 : 251583 ... 265411 : - |
| To GenomeBrowser | scaffold516.1:251583..265411 |
| Genes list of scaffold | scaffold516.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_516.1_20862.t1 | 2 | 1 | LTV | 10 | 76 | 5.2e-37 | 128.3 | 3.2e-25 | 4.8e-21 | 75.7 |
| pfu_aug2.0_516.1_20862.t1 | 2 | 2 | LTV | 94 | 278 | 5.2e-37 | 128.3 | 6.6e-20 | 9.8e-16 | 58.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_516.1_20862.t1 | gi|507634373|ref|XP_004628644.1| | PREDICTED: protein LTV1 homolog [Octodon degus] | 0.0 |
| pfu_aug2.0_516.1_20862.t1 | gi|676438912|ref|XP_009048685.1| | hypothetical protein LOTGIDRAFT_157842 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_516.1_20862.t1 | gi|187608107|ref|NP_001120122.1| | protein LTV1 homolog [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_516.1_20862.t1 | gi|585187601|ref|XP_006745256.1| | PREDICTED: protein LTV1 homolog [Leptonychotes weddellii] | 0.0 |
| pfu_aug2.0_516.1_20862.t1 | gi|291397100|ref|XP_002714903.1| | PREDICTED: protein LTV1 homolog [Oryctolagus cuniculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_516.1_20862.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_516.1_20862.t1 atgcctggaaagaaaaagaaattcatcgataagaagaatgctgtgacttttcacttggtacacagaagtcaaagagatcc tctccaggccagtgaggaagcctctaaacatgtactccaacctctggattcacagagtgatgccaagaagaaaaggatag aggagcagcagaagtttggagtattctttgacgatgattatgactacctccaacatctcaaggaaactgatgaggcatat gaactggaaccggtggataagtctcctcaatctgccaataaaagcaagttatacgagcagtatgacgacagtgagatcgg agcgttagatcaggatgatatagatggatctgtacaacagggaagccatatgttggactctatacttgaagattttgaaa aacagcaaggagataggagaggacttaaggatgtggtggatgagaactcagagcctgaggatgtggatgtggagagtgag gactctggtacagaggcagacctggttaagatggtgatagaggaacctaaggaaaagtgggactgtgaatctatcctaag tacatattccaatttgtataatcacccaaagctgattgaggaaccaaaaaaggaaaagataagattgacaacaaagatag gcattcctcatggagttctagataagccaggtataacccagaaacaactggaggaagagatgcgagctagccgtaaagca gacatggccagtacgtatagacccaaggatgaaacggcagaggagaaaaagatcaggaagaaagccatcaaagaggaaag aaaggatagaagaatggaaaagaagtccaacaaaaaggcatttagtgaagagaaaaagagagtcggaaaagaaatgatga acgttcataataaattaaagggcataaagatatcatga |
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Protein
| Protein ID | pfu_aug2.0_516.1_20862.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_516.1_20862.t1 MPGKKKKFIDKKNAVTFHLVHRSQRDPLQASEEASKHVLQPLDSQSDAKKKRIEEQQKFGVFFDDDYDYLQHLKETDEAY ELEPVDKSPQSANKSKLYEQYDDSEIGALDQDDIDGSVQQGSHMLDSILEDFEKQQGDRRGLKDVVDENSEPEDVDVESE DSGTEADLVKMVIEEPKEKWDCESILSTYSNLYNHPKLIEEPKKEKIRLTTKIGIPHGVLDKPGITQKQLEEEMRASRKA DMASTYRPKDETAEEKKIRKKAIKEERKDRRMEKKSNKKAFSEEKKRVGKEMMNVHNKLKGIKIS |
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