Gene
| Gene Model ID | pfu_aug2.0_516.1_20863 |
|---|---|
| Locus | scaffold516.1 : 265572 ... 276256 : + |
| To GenomeBrowser | scaffold516.1:265572..276256 |
| Genes list of scaffold | scaffold516.1 |
| Synonym | pfu_aug1.0_14471.1_03501 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 26 | GO:0003677 GO:0005634 GO:0006351 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_516.1_20863.t1 | 1 | 1 | Med26 | 31 | 81 | 1.5e-16 | 59.5 | 2.9e-20 | 4.3e-16 | 58.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_516.1_20863.t1 | gi|676421783|ref|XP_009043860.1| | hypothetical protein LOTGIDRAFT_227949 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_516.1_20863.t1 | gi|524885260|ref|XP_005099239.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 26-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_516.1_20863.t1 | gi|746860327|ref|XP_011061000.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 26 [Acromyrmex echinatior] | 2.0e-25 |
| pfu_aug2.0_516.1_20863.t1 | gi|513024216|ref|XP_004873327.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 26 [Heterocephalus glaber] | 3.0e-25 |
| pfu_aug2.0_516.1_20863.t1 | gi|507712582|ref|XP_004647435.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 26 [Octodon degus] | 4.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_516.1_20863.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_516.1_20863.t1 atgcagcactctcccctcgaactaaaagagaagctgctgaagggtcttgatgaagacaataatgtcgtggatatggcggc agttatggccgtcatcaccatactcgaggattatccaatcaccagagatgcacttgagcaaactaggattggcagatatg tcaatgaactcaggaaaaagacaaaaaatgaacaattggcaaaacgagcaaagaaacttgtgcgtagttggcaaaaactt attactccatcaacggagaatgtcactgctgttaacggcacgcatggagaacgggtagctcctagtcatcccagtctggc agctctgcagggtaatggttcaaaaccaaacagtcctgccctgtcgtgtaaatcaggatcacctgccagtacctatagtc cacaaatcattaacagatctagtctttcaaaacagcaaatggggtacagacctaatactccgactctccagcaaacaagt ccggcacttgtacggtccaaacctaatactccaaaattacaacagtcgcaagttaggagtagacccacaacccctagtct gtcgcaatattcaaaacaagggccgtcgttaagtcctgccgatcccaaggatcatagtactccaaagtctgttagttcat ctgttgatagtctgaagaaggtttctccagaaactcaatgtgctgcgtctatgtcttctcgtgatctgattagcaataaa agtagacctaataccccaagtgtttgtagtgaatctatgttagagggcagactctctcgtaacttgtctcaagaatcttt aaataatagtatctcacctgaagctagaattccatgtcaatctcatcattccaaggaggaaaatagtagatcatcattgt ctcctagcacacaaacggactcatccttaaatgtgaaaacacacgtggccagtagaaagcgaacaagagatgggaatcaa aactcttcagcagctcccagtaaacgatctaattctgcaacctttgaaaacgggactgtgaaaaatgtcgcaaacggtgc attattctccttatctggtgaaaaggacaccactcacaaaccaaaaatctcgccatcagatggaaaacaaaatttgccgt ccaggcgtaatgcctgcttaaatgtaagcactgaaaagctttcagagaagaatatgaggacaccgaaagttaaaacaaca gcacagcttattgctgaattgcaagcaaagagcggaagttcagctattggtagtagtgttatacatcagattgaaacaaa tcaaatagctaaggaaagtgatgagatgccgtctgttctcccaccaggggcacgtccgaaacgtaggcggaaaatgagcg atgtgtcatttgatcagggcactccatcaagacctcatggaaatctaagtcaaaccaaaacggaactcgtagaaaaattt ttagagacatccataacccccaatactgcagtagatatgagcccatttaagtacgatatgcccaagtcagaatctctaga gaaggaagataccagcgctgaaatagatgttaccgatagctcaggtggcgatacaagctttagaccgcctgaagtaagca gtacagaaccagtggaggaaactgctggtccatctaatgaagaaactaaaaccaaacatgtgactctggaagagttatat agtcaactcccacctatagactacgataatgttaacttagaggatttagagtatgagatgcctgctgcgattgctgtaga tgatgagagagtgagaaatctgcatgaggaccatgtagagagtgtgaatggttgtatggatataaatggtgcttggcgtg attggacacaaactttaactatagcatcatacgatggggacccgctacatattttgccatacgttcccatagatgattga |
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Protein
| Protein ID | pfu_aug2.0_516.1_20863.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_516.1_20863.t1 MQHSPLELKEKLLKGLDEDNNVVDMAAVMAVITILEDYPITRDALEQTRIGRYVNELRKKTKNEQLAKRAKKLVRSWQKL ITPSTENVTAVNGTHGERVAPSHPSLAALQGNGSKPNSPALSCKSGSPASTYSPQIINRSSLSKQQMGYRPNTPTLQQTS PALVRSKPNTPKLQQSQVRSRPTTPSLSQYSKQGPSLSPADPKDHSTPKSVSSSVDSLKKVSPETQCAASMSSRDLISNK SRPNTPSVCSESMLEGRLSRNLSQESLNNSISPEARIPCQSHHSKEENSRSSLSPSTQTDSSLNVKTHVASRKRTRDGNQ NSSAAPSKRSNSATFENGTVKNVANGALFSLSGEKDTTHKPKISPSDGKQNLPSRRNACLNVSTEKLSEKNMRTPKVKTT AQLIAELQAKSGSSAIGSSVIHQIETNQIAKESDEMPSVLPPGARPKRRRKMSDVSFDQGTPSRPHGNLSQTKTELVEKF LETSITPNTAVDMSPFKYDMPKSESLEKEDTSAEIDVTDSSGGDTSFRPPEVSSTEPVEETAGPSNEETKTKHVTLEELY SQLPPIDYDNVNLEDLEYEMPAAIAVDDERVRNLHEDHVESVNGCMDINGAWRDWTQTLTIASYDGDPLHILPYVPIDD |
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