Gene
| Gene Model ID | pfu_aug2.0_5165.1_19402 |
|---|---|
| Locus | scaffold5165.1 : 1852 ... 17815 : - |
| To GenomeBrowser | scaffold5165.1:1852..17815 |
| Genes list of scaffold | scaffold5165.1 |
| Synonym | pfu_aug1.0_8451.1_24398 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5165.1_19402.t1 | 1 | 1 | tRNA_int_end_N2 | 49 | 115 | 1.4e-17 | 62.8 | 4.3e-21 | 3.2e-17 | 61.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5165.1_19402.t1 | gi|676489909|ref|XP_009065096.1| | hypothetical protein LOTGIDRAFT_229530 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_5165.1_19402.t1 | gi|564260874|ref|XP_006269341.1| | PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_5165.1_19402.t1 | gi|26354132|dbj|BAC40696.1| | unnamed protein product [Mus musculus] | 0.0 |
| pfu_aug2.0_5165.1_19402.t1 | gi|558222726|ref|XP_006136575.1| | PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_5165.1_19402.t1 | gi|524899920|ref|XP_005106386.1| | PREDICTED: tRNA-splicing endonuclease subunit Sen54-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_5165.1_19402.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5165.1_19402.t1 atgaaaagtgctggagagttaattaaacatagtcagagagcaaacaagtcactaccccaaagaggtggacacaaggattt ttcccctgatgatggatggctgcaagctaaaagactggaaaaattcctagaggaaagaaatgaatgtcttagtgaagaaa gagtagagaggctgggtagccttgtgcaaggagaatgggtgcctgaaaaacaactggtggaactacataaagaaatggga aaattctgggcacagatgggatttgttgatgagaaaagaatgtggctgtatccggaagaagctctgtacctaatggaatc taatgtactggaggtctggtataagggtttaccagtgagcattcagcaagcttacatggccttcctcaacacggacatgt cggatgatgagtatcaggtgtacgcacatctacgccgcttaggatatgtcgtcataaggcaccagggaaaattgccattc accagatatgaaagacagataggattagacaaacatataaaagtgaagagccgcaaaaggacaaaacaaaagcaaggcaa tgatgtaaagaccagttgtaagaaaatgaaaacggagccagtggaagtagaagtataccttcctggacaagcgggcacta aagcagaatctaaagacggaaattgtgacattgaagaaaatggacgtgataaatttcataaattgcatagaacaaaaggg aatgttttgatacatgaaaaaggggacgacattgtcatacaggaacaacaaaatcttagtgtagagatggaatacaaaat tcatcaagatgatgattctggatgtaagtggggaagttatgataattgtcggtaccaacttcattatgaatcaaaaacaa aacattcttcatgggattttgatagcatcaacttacctaacatcgcatctttaaaaattgtcgagatggagaaaccttca gcccacttattgccagcaggggtggatcctccaaaggaaaaataccgttttgacgtcaatcattatttcagatcgagatc taaggaaaagaggtcatctaatcgatataacgatgaggaagacagtatttatgaacttgacttttcatatgctgaaatga tacggaaacaacgttctgttcaagcatcaaattggtcggagtacaaggttaaaattagacatattgatgagaattctgta ttagtcagtccggctagtcattactttgatgaggaggtcccacctttattaaggtcagaagacgcttggagcacaagtgc aattcttaggaaattaagtgtcatcaaaagtgtagatgaatcagaagacacaggaaatatggatcgtccaccagatcttc caacattgacagctttagagaattatttcgatgacaaagtaccgttccactgggctgtcaacaacgatggtgaaagtgct ttttacaagtttgattctcaatgcgttcccactctaattcctcttggttga |
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Protein
| Protein ID | pfu_aug2.0_5165.1_19402.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5165.1_19402.t1 MKSAGELIKHSQRANKSLPQRGGHKDFSPDDGWLQAKRLEKFLEERNECLSEERVERLGSLVQGEWVPEKQLVELHKEMG KFWAQMGFVDEKRMWLYPEEALYLMESNVLEVWYKGLPVSIQQAYMAFLNTDMSDDEYQVYAHLRRLGYVVIRHQGKLPF TRYERQIGLDKHIKVKSRKRTKQKQGNDVKTSCKKMKTEPVEVEVYLPGQAGTKAESKDGNCDIEENGRDKFHKLHRTKG NVLIHEKGDDIVIQEQQNLSVEMEYKIHQDDDSGCKWGSYDNCRYQLHYESKTKHSSWDFDSINLPNIASLKIVEMEKPS AHLLPAGVDPPKEKYRFDVNHYFRSRSKEKRSSNRYNDEEDSIYELDFSYAEMIRKQRSVQASNWSEYKVKIRHIDENSV LVSPASHYFDEEVPPLLRSEDAWSTSAILRKLSVIKSVDESEDTGNMDRPPDLPTLTALENYFDDKVPFHWAVNNDGESA FYKFDSQCVPTLIPLG |
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