Gene
| Gene Model ID | pfu_aug2.0_517.1_24125 |
|---|---|
| Locus | scaffold517.1 : 131656 ... 187043 : + |
| To GenomeBrowser | scaffold517.1:131656..187043 |
| Genes list of scaffold | scaffold517.1 |
| Synonym | pfu_aug1.0_8994.1_02683 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_517.1_24125.t1 | 2 | 1 | RabGAP-TBC | 1565 | 1689 | 1.6e-31 | 109.4 | 4.0e-30 | 9.9e-27 | 93.8 |
| pfu_aug2.0_517.1_24125.t1 | 2 | 2 | RabGAP-TBC | 1695 | 1740 | 1.6e-31 | 109.4 | 1.9e-05 | 0.047 | 13.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_517.1_24125.t1 | gi|634883310|ref|XP_007951608.1| | PREDICTED: TBC1 domain family member 9B isoform X1 [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_517.1_24125.t1 | gi|634883313|ref|XP_007951610.1| | PREDICTED: TBC1 domain family member 9B isoform X2 [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_517.1_24125.t1 | gi|156120645|ref|NP_001095469.1| | TBC1 domain family member 9B [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_517.1_24125.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_517.1_24125.t1 atgtttctattgtacagagctgaccagaagatcgacttgtttggtaatgaccagaacggcttcagatgtatacagtggaa caagatcacagataactcgtattactactatgcaaaatccaatacggagagtaacgcccagaacaggcgtattacagtag aggcgtacgattcaagcgtaacatcatgggcgacttcagcgtattgtaacccaacagcaggccctggggccggggagtat catatcctcctcaaacaagggtatgcctctagctccaagcagtggtgccctaacaccctcctggctagtctatcttacta tcacaacgatggggccacaacaacatgtggtacaagctctaactttaccgcctgtccttcatggaccacaatcaatgtag actatagtctgtgcagtaccgtgcaggctttctcacaggaaggtgaagtatattgtatgaacacggtggtagatggaaac tatcattatacagttgtgtacaaccccggaagtgtggacgatattaactactacaggttcacatgtttcattgttaacgg taattgcaattttcctgatacctgggacggaagttggtacgacagcggaatgggggacatacagctacgacgcgccgact ctgccataacgtcagggtgggacataacagtggacggtcagcaggtgacgtcatggacgtgtcagagccaagatacagct aataatctgatgctgttcaaagctgatcggtttgtggagactgcgggtataaagtacaacgtttttagatgtatacaatg gaccaaactgaccaattactcctatatctattacgtcaaaaacgacatggattccacggcaggcaatgagagactttaca aggagcagtacgaccctaacgtcaacacgtgggatacggtcacgtactgtagtccgacgtcaccgcctcctgtagagaga tatcatacaatggtcaagtcagacatggattccacggcaggcaatgagagactttacaaggagcagtacgaccctaacgt caacacgtgggatacggtcacgtactgtagtccgacgtcaccgcctcctgtagagagatatcatacaatggtcaagtcag atcacgtatcagaagtgaagcagtggtgtccggtaccattactagggaactttacgtatacccacagtgacggagtgacg acgtcatgtagcggttcgtctggactgtccgtatgtcccagctggacaactataacgtttgactactccaagtgtagcac cacgcaggtcttctctcaggaggggaccgcccactgcgtgcattccatacagagtggggatacttactacacgtcagtac taaaccccggaaccgtggacggatctacctatcacagatttacttgtttgactctcagatccctatcatcgtcagtggta caggtcagtgatagtactggcctatgtgaagaaggacagacagcggacacacggcagacggacggatcagggatactcac cctcacactcctcgatggcgtctgttcgttgccaggagacctgaatgccacgtggtacgacagtgatctaggtcaaataa cgtttgacaatgacaggtcaaaggtcaccctaggctggccaatcacagtcttcaatacaactgtgtcacaatggacgtgt cagaaccagaatacaaccaatcagtacatgttattcaaatctgacgatataatagaggagggcggtataaaatacaacgt tttcaaatgtattcaatggagaaaaatcacaccctactcatatagatactatatcatgaatgacgaagacgttaacgctg ggaacgtcagagtgttggtggaggagtacgatcctgctgttaataattggccaacagacgtgtattgtaatccagcggcc gggcctgggccggaggaatataacatgctggtcagacaaggtcacgtaacggagagcaaacaatggtgtccaatacccat gcgcgggattttttcatacatacacaatgacggtacaaccaatacttgtggatccggaacgtctgagttgaccctgtgtc cggcatggtcaacaatgtccttcaactactcactatgttcaactgttcaggcattctcacaagaaggcactgtatattgc atagacactgtcgaggatagcgggacttacttcactacagttataaatccaggtcacctggacgattcaacgtacttccg gtttacttgttttgcttttaatgtgagtggatcattagtgtacgcaagtgacagcaaaggaagctgtgaaaagggacaga atccaaaaacaaaaacaacagatggtagtgggactctcattatgacaactttgtacggctcgtgcattatgccatccggc tggactaatagctggtatgattccgggatggccgatgtgacgttttccggatctggtttgacaggatgggatatgacagc ctttgacgattctgtcgcttcatggacatgtcaaactggaaacacggaatacttactgtttaaaggagacaatgaagtga acatggatgacagacccctgaatgtttttcgctgtatccacatcactcagataacagattactcatatatgtactatccg ctggcgggttttgaatctgatgttaagcagtggtgtccacccccattgcgcagtaactttacctacgtccacgatgacgg tacatccaccacgtgttctggaagctctaatcttgccgtctgcccatcgtggacaacgatgacgtatgactacacgcttt gcagtacaccacaggctttctctcaggaaggaattggatattgtgttcaaactgtccagagcggttgtacattctacaca actctccttaaccccggaactgtggatgatattaactaccaccgcttcacatgttatgcaatatctcagaatggaagtac agtatatgctagtgacagtaagggaatatgtgaaacagcacagtcatctcaagtaaaggaacaggacggtagtggtacac ttgtcttaacatcaaatgacagcagttgtagtttccccagcacatgggattccgaatggtatgacagtaactttggcgaa attgtcatagataaccaatcagcagcaatattgacaggctggtccatatctacccacaatgcatctctcacttcctggac atgcgtagcagaggatacaaatagcaacttgtttctgtttttggcaaacgaacacgttcgaacatcaggagatcaacaaa acatattcatgtgtgtaaaatggaccagaattacagacaactcatacaagtatcaagtcatgaatgatgtcggaagtgac acatcacataggatcttcatggagaataacgatccctccgtgaccacgtggtctacaacgccatactgcagtccatcttc acctccatccacagaagaattccacatcctcgtaaagaaaggaatggaatcctctgttagtcagtggtgccctctacctt tgagagcatcgttctcatatactcataacaatggcgccacaacaagctgtaacacggaatcggacatgagtgtatgccca acatggacgacattgacgtttaactatacacagtgctctctcactcaggcgttctcacaggaaggcattgtagattgtgt gtacacggtgacagtagggcaggcgtattatactgtcgttttcaatcctggttatgttgacggaggagcctgtacatttc ctgatctttggaacggtacctggtatgatagtcagcacggagacattgcaatggacataacagagtctaccatcagtaac tggaggtataatgtatcaggaactgacatcacctcatggacgtgtcaaaccaatcacacacaggataacctcctgctgtt tctatcgaaaaacaaatgttttacaatcagtgtgaagaacttcttggatgaaaatgaatggataaaggaaattagtaaca ataacgatgacaatgatgatatagagagtagagcagataatgatagattgctgttagaagtacatgatccaacagtaacg tcctggtcaactactgcttactgtaacccagtatccctgccctcagaccaggagtaccacgttctagtcaaacaaggtgc tcaggcaaataatgatgctctactaataacaaataaaggcaaggtaaataccacaggtgctcaggcaaatattgatgctc tactcataacaaccaaaggcaaggtaaatatcacaggtgcacaggcaaataatgatgctctactcataacaaccaaaggc aaggtaaatatcacaggtgctcaggcaaataatgatgctctactcatagcaaccaaaggcaaggtgaactttatgttcag tcagttgccggagcgagatttgattttagagaagatctcagattttctgtctattcaaccggaaactccctcacgacaga attctcaatgtgaaacagaaacagacagcgaggagtttaccatacagcctgccctggtcagtgtatttggtcgtagagat tcagatgaaatgtcatcgaaggaaacaataaaggtccacctctgggacgtacacttttctgaatttggaagaggtgtatg tatgtacagaacacaccaggcccaggatctcatattgaagggtctcccagagaagtacagaggggaggtgtggatgctgt tctctggtgctgttaatgagatggtatctaacactggttactaccgcggtattgtagaacagtgtagtggtaaaaactcc ctggctacggatgagatagagagagatcttcacaggtcacttcctgagcatccagcatttcagtcagatttaggtatagg agcattaagaagggtgcttacagcttatgcttggagaaatccctctataggatattgtcaagcaatgaatattgtaacga gtgtcttactgctgtacactaacgaggaggaggcattttggttactagtggctatatgtgagagactgctaccagactac tataatactaaagtggtcggagcgctgatagaccaaagtaggtccatacttctccattataggtgcgtcatgccgtttaa ctgtgctgtaaatattttagactgcttcttctttgatggtgctagggttatatttcaagtggcattgacgattctagata agaaggaatcccagttactcagtgctaaggatgacggggaggctatgacagtactaagtacttatctagaaaatatcact aatcaccaatcgtctttacctcatatcgatcatactagcatgatgggtggtgaaaagaaagagccgtctgatgacgtatc tgatctaattgatgagagctacagaaaatttggcgagatcagcaatgaggacattgaaaaactacgtctgaaataccgtc tacaggttgtacagaacatagaggacagtactaggaggaacatattgaggagtgttggaggacatacattatttcaagga aaggaacttgaggatttgtatgttctatttaaggaggagtacctgacctcatgttattggagaaccagtcaacaaccagt agacataggggagaagtttgacccgtcccggccctactatgagctatacaaggtggactttgaacaattcaaaaccatgt tcttctccctgtccccttgggcttcaccctcagaggggggcaatctagcactcagggcatttaagtttctggatgataac aaagacaacatgatcaactttaaggagtttgtatacatatttggtgtcatgtgtaaaggggacgtaactctcaagttgaa gctgctttacttgttacaccaaatagatgtagtgaatgtggaagaagaagaagaagtcacctcgccgtcaactgaatcca cagagagtgctgtagaggcaacaacattttttgatgatggaacctctgaaattctagatgaagagattatattacctggg gatgttattgaggaagaaaaaccgtcagatataaaagaagaggaagacttggagaaggatgaaacaagacaggaagagaa tgaagaagagggggaaaagaggaaagtagtgaagggcaaacaacagaaagctgtagtaacagtcgtacagagccatgccc aatacctgaggatgtatgctaaaaagaaggaactgaatcgtacagacagcaaagcagagtttaaagatgtgccaaggctt aatcagagtcagttcatcagtatgtggagaacattatatgatatgttcagtgatcaagcagaggaacagaagttgtacca ttctgtcgccacggtgggaactcttctcttggaaatcggagaagtagctaaacgattttatctcaccaaatccctatctg agagttcacaaggggagagtattgctaccagtgtcggtagtgaacctgagatacaaaatgcctcacctgccacaaatacg tcaggcgatccttctgtcaatgagattagtagctcggtatcgagtcaggaaaaggtcactaaccaaggtgatagcggtat tgatgtaagaaccacaacatcaatacaggaaaatgattctaccacaccattggctgaaaccagcactgttacatcaaaac cagattctgattggtcgataagttttgaacagttcattgcatctgtgttaactgagcagccattggtcagttattttgag agacagattgatgtgacagatgctgtagacaagatgaggaataggagacttataacctactttccgcgcgggtaa |
|
Protein
| Protein ID | pfu_aug2.0_517.1_24125.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_517.1_24125.t1 MFLLYRADQKIDLFGNDQNGFRCIQWNKITDNSYYYYAKSNTESNAQNRRITVEAYDSSVTSWATSAYCNPTAGPGAGEY HILLKQGYASSSKQWCPNTLLASLSYYHNDGATTTCGTSSNFTACPSWTTINVDYSLCSTVQAFSQEGEVYCMNTVVDGN YHYTVVYNPGSVDDINYYRFTCFIVNGNCNFPDTWDGSWYDSGMGDIQLRRADSAITSGWDITVDGQQVTSWTCQSQDTA NNLMLFKADRFVETAGIKYNVFRCIQWTKLTNYSYIYYVKNDMDSTAGNERLYKEQYDPNVNTWDTVTYCSPTSPPPVER YHTMVKSDMDSTAGNERLYKEQYDPNVNTWDTVTYCSPTSPPPVERYHTMVKSDHVSEVKQWCPVPLLGNFTYTHSDGVT TSCSGSSGLSVCPSWTTITFDYSKCSTTQVFSQEGTAHCVHSIQSGDTYYTSVLNPGTVDGSTYHRFTCLTLRSLSSSVV QVSDSTGLCEEGQTADTRQTDGSGILTLTLLDGVCSLPGDLNATWYDSDLGQITFDNDRSKVTLGWPITVFNTTVSQWTC QNQNTTNQYMLFKSDDIIEEGGIKYNVFKCIQWRKITPYSYRYYIMNDEDVNAGNVRVLVEEYDPAVNNWPTDVYCNPAA GPGPEEYNMLVRQGHVTESKQWCPIPMRGIFSYIHNDGTTNTCGSGTSELTLCPAWSTMSFNYSLCSTVQAFSQEGTVYC IDTVEDSGTYFTTVINPGHLDDSTYFRFTCFAFNVSGSLVYASDSKGSCEKGQNPKTKTTDGSGTLIMTTLYGSCIMPSG WTNSWYDSGMADVTFSGSGLTGWDMTAFDDSVASWTCQTGNTEYLLFKGDNEVNMDDRPLNVFRCIHITQITDYSYMYYP LAGFESDVKQWCPPPLRSNFTYVHDDGTSTTCSGSSNLAVCPSWTTMTYDYTLCSTPQAFSQEGIGYCVQTVQSGCTFYT TLLNPGTVDDINYHRFTCYAISQNGSTVYASDSKGICETAQSSQVKEQDGSGTLVLTSNDSSCSFPSTWDSEWYDSNFGE IVIDNQSAAILTGWSISTHNASLTSWTCVAEDTNSNLFLFLANEHVRTSGDQQNIFMCVKWTRITDNSYKYQVMNDVGSD TSHRIFMENNDPSVTTWSTTPYCSPSSPPSTEEFHILVKKGMESSVSQWCPLPLRASFSYTHNNGATTSCNTESDMSVCP TWTTLTFNYTQCSLTQAFSQEGIVDCVYTVTVGQAYYTVVFNPGYVDGGACTFPDLWNGTWYDSQHGDIAMDITESTISN WRYNVSGTDITSWTCQTNHTQDNLLLFLSKNKCFTISVKNFLDENEWIKEISNNNDDNDDIESRADNDRLLLEVHDPTVT SWSTTAYCNPVSLPSDQEYHVLVKQGAQANNDALLITNKGKVNTTGAQANIDALLITTKGKVNITGAQANNDALLITTKG KVNITGAQANNDALLIATKGKVNFMFSQLPERDLILEKISDFLSIQPETPSRQNSQCETETDSEEFTIQPALVSVFGRRD SDEMSSKETIKVHLWDVHFSEFGRGVCMYRTHQAQDLILKGLPEKYRGEVWMLFSGAVNEMVSNTGYYRGIVEQCSGKNS LATDEIERDLHRSLPEHPAFQSDLGIGALRRVLTAYAWRNPSIGYCQAMNIVTSVLLLYTNEEEAFWLLVAICERLLPDY YNTKVVGALIDQSRSILLHYRCVMPFNCAVNILDCFFFDGARVIFQVALTILDKKESQLLSAKDDGEAMTVLSTYLENIT NHQSSLPHIDHTSMMGGEKKEPSDDVSDLIDESYRKFGEISNEDIEKLRLKYRLQVVQNIEDSTRRNILRSVGGHTLFQG KELEDLYVLFKEEYLTSCYWRTSQQPVDIGEKFDPSRPYYELYKVDFEQFKTMFFSLSPWASPSEGGNLALRAFKFLDDN KDNMINFKEFVYIFGVMCKGDVTLKLKLLYLLHQIDVVNVEEEEEVTSPSTESTESAVEATTFFDDGTSEILDEEIILPG DVIEEEKPSDIKEEEDLEKDETRQEENEEEGEKRKVVKGKQQKAVVTVVQSHAQYLRMYAKKKELNRTDSKAEFKDVPRL NQSQFISMWRTLYDMFSDQAEEQKLYHSVATVGTLLLEIGEVAKRFYLTKSLSESSQGESIATSVGSEPEIQNASPATNT SGDPSVNEISSSVSSQEKVTNQGDSGIDVRTTTSIQENDSTTPLAETSTVTSKPDSDWSISFEQFIASVLTEQPLVSYFE RQIDVTDAVDKMRNRRLITYFPRG |
|