Gene
| Gene Model ID | pfu_aug2.0_517.1_24128 |
|---|---|
| Locus | scaffold517.1 : 217567 ... 236541 : + |
| To GenomeBrowser | scaffold517.1:217567..236541 |
| Genes list of scaffold | scaffold517.1 |
| Synonym | pfu_aug1.0_11046.1_17712 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pachytene checkpoint protein 2 homolog | GO:0001556 GO:0001673 GO:0005524 GO:0006302 GO:0007130 GO:0007131 GO:0007141 GO:0007144 GO:0007286 GO:0042802 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_517.1_24128.t1 | 1 | 1 | AAA_22 | 170 | 280 | 4.2e-08 | 33.3 | 2.8e-10 | 1.1e-07 | 32.1 |
| pfu_aug2.0_517.1_24128.t1 | 1 | 1 | AAA_17 | 171 | 199 | 4.7e-07 | 30.6 | 4.2e-09 | 1.6e-06 | 28.9 |
| pfu_aug2.0_517.1_24128.t1 | 1 | 1 | AAA | 172 | 317 | 3.8e-31 | 108.0 | 1.7e-33 | 6.3e-31 | 107.3 |
| pfu_aug2.0_517.1_24128.t1 | 1 | 1 | AAA_18 | 172 | 238 | 7.4e-07 | 29.5 | 3.9e-09 | 1.5e-06 | 28.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_517.1_24128.t1 | gi|524867044|ref|XP_005090335.1| | PREDICTED: pachytene checkpoint protein 2 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_517.1_24128.t1 | gi|729723327|ref|XP_010575190.1| | PREDICTED: pachytene checkpoint protein 2 homolog [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_517.1_24128.t1 | gi|690444158|ref|XP_009322760.1| | PREDICTED: pachytene checkpoint protein 2 homolog [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_517.1_24128.t1 | gi|674085865|ref|XP_008850728.1| | PREDICTED: pachytene checkpoint protein 2 homolog [Nannospalax galili] | 0.0 |
| pfu_aug2.0_517.1_24128.t1 | gi|723548868|ref|XP_010297465.1| | PREDICTED: pachytene checkpoint protein 2 homolog [Balearica regulorum gibbericeps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_517.1_24128.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_517.1_24128.t1 atggaccaggtctctgatttagaaaatgcactaccagttgcttcagatccagtttaccacgttgaaatatgtcaaaatcc aaacagtactgcaaatgacaaggtgataaaagacagagttacttccctgttacaaagacaaagagtagcggcatatggtg actttaagctgacagagtttgatgacgactttctgaagaatcatgttgtatctatatctctatgtgatacagacatagca ggacccaataaaaagggtatagacctgactgatgggaatatacagcttcatgtctttcaattacaaaacgacggtccggg tacagaggagttagacgacgaggacctcgcggcagccagccattggatattaccggccggggagttcaacgggatctggg aaagtcttgtctttgacgatgaagttaaacataggctgttgaattatgcaacaacaacgctattattctcagacagacaa gttgacaacacaatcataacatggaataaagtgatattattacatggaccacctggtacagggaaaacatccctttgtaa agccctcgcccagaaactggttatacgactgtccagtagatacaagtacggacagctaatagaaatcaacagtcacagtc tctgctcaaagtggttctctgagagtggtaagctggtgatgaagatgtttcagaagatacaggagttaatagatgatcct gacgccttggtctttgttctcatagacgaggtggagagtttaacagcagccaggaaaagttcaatgtctggttctgaccc gtccgatgccattagagtcgtgaacgctttactcactcagctagatcagattaaaagatttcccaatgtgatgatcctta ccacctctaacgtgacaggagctatagatctggcctttgtagatagagcagacattaaacagtatataggacctccctca ccagaggccatattcaaaatatatcactcctgtatacaggaactgatgagggtgggtataatcttcccagaggagcagat ttttgatttgcgtgcgttgactgtgatgagatttatagagaatgatgccaccaggaacagcctacagttaagagagatat cgaggcaaagttatggtttgagtggcaggtctttacggaaattaccattcattgctcatgcaatgtatttacaaagtgct caagtacctttaaccagatttttggactctttaaacaaagctgtgcaacgacagtttcaagagagagaggatctgaccaa ggactcttaa |
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Protein
| Protein ID | pfu_aug2.0_517.1_24128.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_517.1_24128.t1 MDQVSDLENALPVASDPVYHVEICQNPNSTANDKVIKDRVTSLLQRQRVAAYGDFKLTEFDDDFLKNHVVSISLCDTDIA GPNKKGIDLTDGNIQLHVFQLQNDGPGTEELDDEDLAAASHWILPAGEFNGIWESLVFDDEVKHRLLNYATTTLLFSDRQ VDNTIITWNKVILLHGPPGTGKTSLCKALAQKLVIRLSSRYKYGQLIEINSHSLCSKWFSESGKLVMKMFQKIQELIDDP DALVFVLIDEVESLTAARKSSMSGSDPSDAIRVVNALLTQLDQIKRFPNVMILTTSNVTGAIDLAFVDRADIKQYIGPPS PEAIFKIYHSCIQELMRVGIIFPEEQIFDLRALTVMRFIENDATRNSLQLREISRQSYGLSGRSLRKLPFIAHAMYLQSA QVPLTRFLDSLNKAVQRQFQEREDLTKDS |
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