Gene
| Gene Model ID | pfu_aug2.0_5170.1_02713 |
|---|---|
| Locus | scaffold5170.1 : 1 ... 4995 : - |
| To GenomeBrowser | scaffold5170.1:1..4995 |
| Genes list of scaffold | scaffold5170.1 |
| Synonym | pfu_aug1.0_3858.1_59339 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5170.1_02713.t1 | 2 | 1 | FACT-Spt16_Nlob | 10 | 158 | 3.36312e-44 | 150.2 | 0.0 | 3.36312e-44 | 150.2 |
| pfu_aug2.0_5170.1_02713.t1 | 1 | 1 | Peptidase_M24 | 174 | 288 | 1.4e-09 | 37.8 | 5.4e-13 | 2.0e-09 | 37.3 |
| pfu_aug2.0_5170.1_02713.t1 | 2 | 2 | FACT-Spt16_Nlob | 189 | 227 | 3.36312e-44 | 150.2 | 0.19 | 720.0 | -0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5170.1_02713.t1 | gi|524892209|ref|XP_005102634.1| | PREDICTED: FACT complex subunit SPT16-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_5170.1_02713.t1 | gi|676472655|ref|XP_009059560.1| | hypothetical protein LOTGIDRAFT_124718 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_5170.1_02713.t1 | gi|291226067|ref|XP_002733005.1| | PREDICTED: FACT complex subunit SPT16 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_5170.1_02713.t1 | gi|260816199|ref|XP_002602859.1| | hypothetical protein BRAFLDRAFT_130325 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_5170.1_02713.t1 | gi|759034381|ref|XP_011333476.1| | PREDICTED: FACT complex subunit spt16 isoform X3 [Cerapachys biroi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_5170.1_02713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5170.1_02713.t1 atgcaaagactggacttagaatggtcttcaaattttcagaaagcgtcaggtggtgatactctgggacaggttgatgccct ggcggcggctgtaggagttgatgaggaagtagtgtattcaaaatcaacggcattacagacatggctatttggatatgaat tgacggacactgtgattgtactgtgtgagaagagcattaatatcttggccagtaaaaagaaaatagagtttctgaaacaa ttggaatcaaccaaagaaaatgaccaaggtgtaccacagatcaaactgctcaccagagataagggagacaaggacaaagc aaattttaagaagctcgtggatgccattaaagagagtaagaagggtaaaacgctcggagaatttcccaaagacaagtttc caggagaatttatggatggctggcgttcctctttgtcgggagaaggctttactaagatggatttgagtgcatcaatggca tatataatggcaccaaaagaagaagcagaagttaaaaccatgcagaaagcctcaactgtaacgtgtgacgtcttcactaa atatctacgggaacaaatcatggaaatcatagacgcagagaagaaagtcaaacactctaagcttgccgatggcgtagatc aagcgttacaaaacaagaagtatgtgtcgggtgtagattcgtcacagcttgacatgtgttacccggctattatacagagt ggtggaaaatacagcctcaaattcagcactgtcagtgatgacaccgttttggattttgggacgataatttgtgctatggg agtgagatacaagtcatactgtgcaaacatagtaaggaccctgatggtagaccctaccgacaaaatgcagaaagatta |
|
Protein
| Protein ID | pfu_aug2.0_5170.1_02713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5170.1_02713.t1 MQRLDLEWSSNFQKASGGDTLGQVDALAAAVGVDEEVVYSKSTALQTWLFGYELTDTVIVLCEKSINILASKKKIEFLKQ LESTKENDQGVPQIKLLTRDKGDKDKANFKKLVDAIKESKKGKTLGEFPKDKFPGEFMDGWRSSLSGEGFTKMDLSASMA YIMAPKEEAEVKTMQKASTVTCDVFTKYLREQIMEIIDAEKKVKHSKLADGVDQALQNKKYVSGVDSSQLDMCYPAIIQS GGKYSLKFSTVSDDTVLDFGTIICAMGVRYKSYCANIVRTLMVDPTDKMQKD |
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