Gene
| Gene Model ID | pfu_aug2.0_5170.1_02714 |
|---|---|
| Locus | scaffold5170.1 : 13811 ... 31368 : - |
| To GenomeBrowser | scaffold5170.1:13811..31368 |
| Genes list of scaffold | scaffold5170.1 |
| Synonym | pfu_aug1.0_5277.1_38111 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna topoisomerase 1-like | GO:0003677 GO:0003917 GO:0003918 GO:0005694 GO:0006265 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5170.1_02714.t1 | 2 | 1 | Topoisom_I_N | 53 | 267 | 0.0 | 329.0 | 0.0 | 0.0 | 329.0 |
| pfu_aug2.0_5170.1_02714.t1 | 3 | 1 | Topoisom_I | 75 | 153 | 2.8e-15 | 56.0 | 0.078 | 230.0 | 0.6 |
| pfu_aug2.0_5170.1_02714.t1 | 2 | 1 | Topo_C_assoc | 157 | 169 | 9.2e-34 | 114.9 | 4.6 | 14000.0 | -4.2 |
| pfu_aug2.0_5170.1_02714.t1 | 3 | 2 | Topoisom_I | 270 | 322 | 2.8e-15 | 56.0 | 9.6e-19 | 2.8e-15 | 56.0 |
| pfu_aug2.0_5170.1_02714.t1 | 2 | 2 | Topoisom_I_N | 305 | 399 | 0.0 | 329.0 | 0.14 | 400.0 | 0.1 |
| pfu_aug2.0_5170.1_02714.t1 | 3 | 3 | Topoisom_I | 355 | 394 | 2.8e-15 | 56.0 | 2.4 | 7000.0 | -4.2 |
| pfu_aug2.0_5170.1_02714.t1 | 2 | 2 | Topo_C_assoc | 403 | 473 | 9.2e-34 | 114.9 | 3.1e-37 | 9.2e-34 | 114.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5170.1_02714.t1 | gi|340720974|ref|XP_003398903.1| | PREDICTED: DNA topoisomerase I, mitochondrial isoform X1 [Bombus terrestris] | 0.0 |
| pfu_aug2.0_5170.1_02714.t1 | gi|350404638|ref|XP_003487171.1| | PREDICTED: DNA topoisomerase I, mitochondrial [Bombus impatiens] | 0.0 |
| pfu_aug2.0_5170.1_02714.t1 | gi|170035478|ref|XP_001845596.1| | conserved hypothetical protein [Culex quinquefasciatus] | 0.0 |
| pfu_aug2.0_5170.1_02714.t1 | gi|512926359|ref|XP_004931066.1| | 0.0 | |
| pfu_aug2.0_5170.1_02714.t1 | gi|676472661|ref|XP_009059562.1| | hypothetical protein LOTGIDRAFT_192697 [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_5170.1_02714.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5170.1_02714.t1 aaaaagaaaaagaaggtgaaaactgagaagggatcaggaaagtcggcaagcccaagtaaaacaccaaataaaacaccaac taagggcaagggagccaaggctgaggaatcaaatgaagtctggagatggtgggaagaggagagacgtgatgacggagtta agtggacatttttagaacacaaaggtcctgtgtttgcccctgactacgagccagtacctgaggatgtcaggttttattat gatggtaaagagatgaagcttagtcaggacacagaggaagtggccacattttatgccaggatgttagaacatgactacac gaccaaggaggtgtttaatcataacttcatgaaggactggagaaaggtgatgaatcagcatgagaaagagaagatcaaag atctcagtaagtgtaactttaaggaaatggccgagtatttcaaacaactgagcgaggaaagaaaaaaccgaacgaaggag gaaaagaagaaacttaaagaggaaaatgaagcaatacagaaggagtacggcttttgtgtaatggacgggcataaagagaa gattggtaacttccgtatagaacctccgggtctgttcaggggtcgtggtgaccatccaaagcagggaatgttgaaatgta gaaccatgccggaagatgtgattattaactgtagcaaggattccaaggcacctaaagctccagatggtcataagtggaaa gaagtccgcaatgacaataaggtatcatggctggcttgttggacagagaacatccagggatctacaaagtatgtcatgct gaacgcagcctccagacttaagggagaaaaagactggcagaaatatgagactgcgagacggctacataagacagtggaca agatccgtgcccaatacagagaggactggaaatccaaagagatgagaatacgtcagagagctgtggccctgtactttatt gacaagattgatgacaagaaagcctctataaaagaagccaagaaactgatgaaggatgccaagtcagattataaaaatca caagtcagagaaaacaaagaggtatgtcctaaaaaagtcagactataaaaatcacaagtcagagaaaacaaagaggtata tccaaaaaaagtcagattataaaaatcacatgtcagagaaaactaagagtgccttggagaagagaaagaaagccgtacag agattggaagaacaattgacaaaattagaagtccaggcaacagataaggaggagaacaaagagattgcccttggtacctc caaattaaattacttagatcccagaatttctgtagcatggtgcaagaaatgggaggttccaattgagaagatttacaaca aaacgcagagagagaaattcagatgggctatcgacatggcgacagcagaatttgaattttga |
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Protein
| Protein ID | pfu_aug2.0_5170.1_02714.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5170.1_02714.t1 KKKKKVKTEKGSGKSASPSKTPNKTPTKGKGAKAEESNEVWRWWEEERRDDGVKWTFLEHKGPVFAPDYEPVPEDVRFYY DGKEMKLSQDTEEVATFYARMLEHDYTTKEVFNHNFMKDWRKVMNQHEKEKIKDLSKCNFKEMAEYFKQLSEERKNRTKE EKKKLKEENEAIQKEYGFCVMDGHKEKIGNFRIEPPGLFRGRGDHPKQGMLKCRTMPEDVIINCSKDSKAPKAPDGHKWK EVRNDNKVSWLACWTENIQGSTKYVMLNAASRLKGEKDWQKYETARRLHKTVDKIRAQYREDWKSKEMRIRQRAVALYFI DKIDDKKASIKEAKKLMKDAKSDYKNHKSEKTKRYVLKKSDYKNHKSEKTKRYIQKKSDYKNHMSEKTKSALEKRKKAVQ RLEEQLTKLEVQATDKEENKEIALGTSKLNYLDPRISVAWCKKWEVPIEKIYNKTQREKFRWAIDMATAEFEF |
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