Gene
| Gene Model ID | pfu_aug2.0_52.1_06820 |
|---|---|
| Locus | scaffold52.1 : 4350 ... 14625 : - |
| To GenomeBrowser | scaffold52.1:4350..14625 |
| Genes list of scaffold | scaffold52.1 |
| Synonym | pfu_aug1.0_1432.1_58495 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_52.1_06820.t1 | 2 | 1 | RRM_5 | 71 | 90 | 3.2e-06 | 26.9 | 0.12 | 580.0 | 0.4 |
| pfu_aug2.0_52.1_06820.t1 | 2 | 1 | RRM_1 | 75 | 94 | 1.3e-13 | 50.3 | 0.35 | 1700.0 | -1.3 |
| pfu_aug2.0_52.1_06820.t1 | 2 | 2 | RRM_1 | 346 | 415 | 1.3e-13 | 50.3 | 1.7e-16 | 8.5e-13 | 47.7 |
| pfu_aug2.0_52.1_06820.t1 | 1 | 1 | RRM_6 | 346 | 413 | 7.6e-11 | 41.8 | 4.3e-14 | 2.1e-10 | 40.4 |
| pfu_aug2.0_52.1_06820.t1 | 2 | 2 | RRM_5 | 383 | 419 | 3.2e-06 | 26.9 | 9.3e-09 | 4.6e-05 | 23.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_52.1_06820.t1 | gi|676460421|ref|XP_009055617.1| | hypothetical protein LOTGIDRAFT_104984 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_52.1_06820.t1 | gi|524915434|ref|XP_005112516.1| | PREDICTED: RNA-binding protein 41-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_52.1_06820.t1 | gi|556994962|ref|XP_006001369.1| | PREDICTED: RNA-binding protein 41 isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_52.1_06820.t1 | gi|556994959|ref|XP_006001368.1| | PREDICTED: RNA-binding protein 41 isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_52.1_06820.t1 | gi|194228182|ref|XP_001492854.2| | PREDICTED: RNA-binding protein 41 isoform X1 [Equus caballus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_52.1_06820.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_52.1_06820.t1 atggatgtgtcattagtaccaaagagtagaaaatcggccctcctcccaccgtccgaagaaatccaaacagaggcacaaaa gcagttgaaaacactggtgcagaaacaactccacaaagatgttaccattcaacaacaactgtctcagaagaggagctttg cgagttcgagtttccatgacccggcagtgagcaaactttcaggattagtcaaactcgaggattttgccagttgggaagat gcagattcttacattacagaattaaaagggtatggattaacattggaggaaatagagctgaaactcaccaatgaatatcc taaactggactcaggaaagagaccaaggtatggaattgatccatctttacaacagagtaagctagaagagattgagagga aaatagaagagaagaaaaacaagttgaaaagccaagatgtgttttacggtcagaaaatactgactcgtcacgaaatggag gtcgaaaagtcactactgcgagaatcgagtgtagagggtaagaagttatcatctatgttaacagcagtgaagcattgtgg gaaggctgtgcatccagatgatcccatgaatcatttggaggaaattctagaaaaggtaaccagtagcaacaaacctacaa agaaggcagacaacaagaagaaacacaagaacaaaggattacaaattgaagtacaaaatagagaatttacccagtccaga gatcatgggatagaaaatgtagagagtgtgaacgaaaaccgtgaagagtgttcaaatgaagtgctaagggaaaattcaag acgtttgactgagacaaatttagaaactcaattgaccaatgaagcggatacttgtaattctcgccctaattgttcagaca gggaaattcagggaaaaaagacaggtgctgtagaactgcagtctaaaatagcatacattccagaatgtgatattgtggct aacagactgagcgtagatgaaataaaagctttacccagatttgaaaattactctgctgggacaccaaataagacactgta ccttaagaatctgactcccaaagtgacaccagaagacttagtctctgtgtttggcaggttccaagagtccggtcagcaac aaatcatatatcgacttatgtctgggagaatgaaggggcaagcttttgtagaatttaaagacgaagaaacagcagctaag gctcttatacttgttaatgggtatatgctgaaagggaagccaatggttattcagtatggaaagaaacaacagtga |
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Protein
| Protein ID | pfu_aug2.0_52.1_06820.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_52.1_06820.t1 MDVSLVPKSRKSALLPPSEEIQTEAQKQLKTLVQKQLHKDVTIQQQLSQKRSFASSSFHDPAVSKLSGLVKLEDFASWED ADSYITELKGYGLTLEEIELKLTNEYPKLDSGKRPRYGIDPSLQQSKLEEIERKIEEKKNKLKSQDVFYGQKILTRHEME VEKSLLRESSVEGKKLSSMLTAVKHCGKAVHPDDPMNHLEEILEKVTSSNKPTKKADNKKKHKNKGLQIEVQNREFTQSR DHGIENVESVNENREECSNEVLRENSRRLTETNLETQLTNEADTCNSRPNCSDREIQGKKTGAVELQSKIAYIPECDIVA NRLSVDEIKALPRFENYSAGTPNKTLYLKNLTPKVTPEDLVSVFGRFQESGQQQIIYRLMSGRMKGQAFVEFKDEETAAK ALILVNGYMLKGKPMVIQYGKKQQ |
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