Gene
| Gene Model ID | pfu_aug2.0_5224.1_16085 |
|---|---|
| Locus | scaffold5224.1 : 1 ... 10955 : - |
| To GenomeBrowser | scaffold5224.1:1..10955 |
| Genes list of scaffold | scaffold5224.1 |
| Synonym | pfu_aug1.0_714.1_07641 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna ligase 1-like | GO:0003677 GO:0003910 GO:0005524 GO:0005634 GO:0005739 GO:0006310 GO:0046872 GO:0051103 GO:0051301 GO:0071897 GO:1903461 GO:1903469 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5224.1_16085.t1 | 1 | 1 | DNA_ligase_A_N | 34 | 222 | 0.0 | 167.8 | 0.0 | 0.0 | 166.9 |
| pfu_aug2.0_5224.1_16085.t1 | 1 | 1 | DNA_ligase_A_M | 291 | 495 | 0.0 | 218.7 | 0.0 | 0.0 | 218.1 |
| pfu_aug2.0_5224.1_16085.t1 | 1 | 1 | DNA_ligase_A_C | 520 | 631 | 9.6e-25 | 86.8 | 6.9e-28 | 2.0e-24 | 85.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5224.1_16085.t1 | gi|524911143|ref|XP_005110440.1| | PREDICTED: DNA ligase 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_5224.1_16085.t1 | gi|147901564|ref|NP_001081653.1| | DNA ligase 1 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_5224.1_16085.t1 | gi|187608350|ref|NP_001119860.1| | DNA ligase 1 [Danio rerio] | 0.0 |
| pfu_aug2.0_5224.1_16085.t1 | gi|548353480|ref|XP_005728992.1| | PREDICTED: DNA ligase 1-like [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_5224.1_16085.t1 | gi|583994604|ref|XP_006792443.1| | PREDICTED: DNA ligase 1-like [Neolamprologus brichardi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_5224.1_16085.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5224.1_16085.t1 atgagctcaggaagtaagaaggaacagggtactggattcaatcctgctaaaacaaagtacaatcctattgatgatgcctg ctggaaacagaaagaaaaagtaccataccttgctcttgccaaaacatttgaagcgatcgaaaacatatctggaaggttga aaaccatagaaattttgtgtaactttttccgctctgtgattgttctgagccctgatgatctactgaactgtgtataccta tgtctgaacaagttggccccagcatatgagggtgtcgagcttggtataggggaaacggtactgatgaaggctatagctca ggccacaggaagaagcatggacaaaattaaagcagatgcacatgaaaagggtgacctcggaattgtggcggagataaagt gttcaagcccagcattatttcctcagtccagtagaagttcacagagaacgatgtttgccccacccaaactgacagtccct gctgtgttctccaagctgaaggagattgccactatgacagggaatgcttcgatgaccaagaagatagagaagataaaggg gatgtttgtggcatgtagggagtgtgaggccaggtatctgatacggtcactcggcggtaaactgaggataggattagcag aacagagtgttctaacagcactaggaaatgctgtgttcctaacacctccatcaacagattttcccccagaggtactagat gctgggaaaggacttggtcctgatactttaaagaagaaaatggaagaatctgagtgtccaaattatggtgccattattcc tgtcttgattaaagaaggaattgatgaacttcagaagaaatgtaaacttactccaggtgttcctctgaaacccatgttgg cccatccaactaaaggtataagtgaagtactcaagagatttgaagatgctgaatttacctgtgaatacaagtatgatgga gaaagggcacagatccatatcttagaaaatggcaaagttcatatctacagtcgtaattctgaggataatacatcaaaata tcccgatataatagcaaggattcctaaggtgttaaaagacagtgttaaatcctgtgtgttagattcagaagccgtggcgt gggacgcagagaaaaaacaaatccaaccattccaagtacttagtcataggaagagaaaggatgctgatgcttcagagatt aagatccatgtatgtgtgtatgcctttgatctactgtaccttaatggtgaatctctagtcaaggagccgttcaggcggag gcgagatttactgaggtcttcatttgaggaggtggaaggagaatttatgttcgccaagtctatgatctcagcaaatacag aggagattggagaatttttggaagaatcaataaaaggtaactgtgaaggattaatggtaaagacattggacaaagatgca acatatgaaatagccaaaaggtcacacaattggttaaaggttaagaaggattatttagagggagtaggagatacattaga cgtggtggtgatgggaggttacatagggacaggaaaacgtacaggacgatatggaggattcttactggcctgttatgacg aggagaatgaagaatttcagtccatctgcaagattggcacaggatttaaggatgaagatctggagactcacgctaatttc ttcaaggagcacatcacagagaaacctaagcagtattaccgttacgatacctccatcgccccagatcattggtttgatgc tgtacaggtgtgggaaatcaaatgtgcagatctgtccatctcaccaacacacatggctgccgcaggactggttgatccag agaaaggaatttccctaagatttcctagatttctgagaatacgagacgacaaaaagcctgaggaggccacatcagcttcc caggtggcagagatgtacaagagtcagcagcagatccagaatcagaacatggacagtggtaaaaacgctcaggatgatga tgaattttattga |
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Protein
| Protein ID | pfu_aug2.0_5224.1_16085.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5224.1_16085.t1 MSSGSKKEQGTGFNPAKTKYNPIDDACWKQKEKVPYLALAKTFEAIENISGRLKTIEILCNFFRSVIVLSPDDLLNCVYL CLNKLAPAYEGVELGIGETVLMKAIAQATGRSMDKIKADAHEKGDLGIVAEIKCSSPALFPQSSRSSQRTMFAPPKLTVP AVFSKLKEIATMTGNASMTKKIEKIKGMFVACRECEARYLIRSLGGKLRIGLAEQSVLTALGNAVFLTPPSTDFPPEVLD AGKGLGPDTLKKKMEESECPNYGAIIPVLIKEGIDELQKKCKLTPGVPLKPMLAHPTKGISEVLKRFEDAEFTCEYKYDG ERAQIHILENGKVHIYSRNSEDNTSKYPDIIARIPKVLKDSVKSCVLDSEAVAWDAEKKQIQPFQVLSHRKRKDADASEI KIHVCVYAFDLLYLNGESLVKEPFRRRRDLLRSSFEEVEGEFMFAKSMISANTEEIGEFLEESIKGNCEGLMVKTLDKDA TYEIAKRSHNWLKVKKDYLEGVGDTLDVVVMGGYIGTGKRTGRYGGFLLACYDEENEEFQSICKIGTGFKDEDLETHANF FKEHITEKPKQYYRYDTSIAPDHWFDAVQVWEIKCADLSISPTHMAAAGLVDPEKGISLRFPRFLRIRDDKKPEEATSAS QVAEMYKSQQQIQNQNMDSGKNAQDDDEFY |
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