Gene
| Gene Model ID | pfu_aug2.0_524.1_14253 |
|---|---|
| Locus | scaffold524.1 : 23417 ... 54225 : - |
| To GenomeBrowser | scaffold524.1:23417..54225 |
| Genes list of scaffold | scaffold524.1 |
| Synonym | pfu_aug1.0_15126.1_18194 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent dna helicase pif1 | GO:0000723 GO:0003678 GO:0006281 GO:0006310 GO:0008156 GO:0031966 GO:0032392 GO:0043566 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_524.1_14253.t1 | 1 | 1 | AAA_30 | 2 | 206 | 1.3e-15 | 57.5 | 5.8e-18 | 2.8e-15 | 56.4 |
| pfu_aug2.0_524.1_14253.t1 | 3 | 1 | PIF1 | 4 | 155 | 1.1e-31 | 110.1 | 7.5e-31 | 3.6e-28 | 98.5 |
| pfu_aug2.0_524.1_14253.t1 | 2 | 1 | AAA_19 | 10 | 61 | 6.7e-06 | 25.7 | 6.6e-08 | 3.2e-05 | 23.6 |
| pfu_aug2.0_524.1_14253.t1 | 1 | 1 | AAA_22 | 16 | 145 | 1.6e-06 | 28.2 | 1.4e-08 | 6.8e-06 | 26.2 |
| pfu_aug2.0_524.1_14253.t1 | 3 | 2 | PIF1 | 203 | 299 | 1.1e-31 | 110.1 | 3.5e-06 | 0.0017 | 17.4 |
| pfu_aug2.0_524.1_14253.t1 | 2 | 2 | AAA_19 | 640 | 685 | 6.7e-06 | 25.7 | 4.7 | 2200.0 | -1.6 |
| pfu_aug2.0_524.1_14253.t1 | 3 | 3 | PIF1 | 798 | 865 | 1.1e-31 | 110.1 | 6.2 | 2900.0 | -3.2 |
| pfu_aug2.0_524.1_14253.t1 | 1 | 1 | PHD | 987 | 1038 | 3.9e-09 | 36.0 | 8.2e-12 | 3.9e-09 | 36.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_524.1_14253.t1 | gi|658014144|ref|XP_008342384.1| | PREDICTED: ATP-dependent DNA helicase PIF1-like [Malus domestica] | 0.0 |
| pfu_aug2.0_524.1_14253.t1 | gi|591373789|ref|XP_007061589.1| | PREDICTED: ATP-dependent DNA helicase PIF1-like, partial [Chelonia mydas] | 0.0 |
| pfu_aug2.0_524.1_14253.t1 | gi|50293687|ref|XP_449255.1| | hypothetical protein [Candida glabrata CBS 138] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_524.1_14253.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_524.1_14253.t1 atggactcagaacaaataattgcatttgaactggctcaaaagggtcacaatttagttatttgtggtcaagcaggtacagg gaaaacatacttaatgaaagagatcactcgtcgacttcgagtgaagggtaaaaatgttgcagttgtgtgttcaacaggga ttgcagctacccgattcagtgatttaggaggtgttactgtaaacaaatgggctgggattttggacggtcgacacactaat gacgaagtgctgcatttactacgtaccgacgaaaggtttgttgaaaataaacagaatattttgcatactgacacattggt gattgacgaaatttctatgataagtgctaaaactctcggacaagtgcagtttttatgtcaacatctaagaaattcaagcg acctatttggaggaatgcaaatcatccttagtggggatttttatcagttgccccctgtttccaatgaactgtatggagac ttcggtcatcactgttttaagcttaagtggtttaaagaaatttttccccatacaattaagttgcagaccattcataaaca gacagaggcagacctcatcaaatgtgtaaatgaatgtgctgttggggctgtatctccagatacagagaaatttataaagc gtgtatccagacctattagtcaagatgctgttcagttatttgccagaaatattgatgcggatttatataactataaaaaa ctgaatcaggaaccaggcgaactcaaagtttatgactccattgatgaaggatcagcacactatttaggtaaattcttggc accaagacatttaggactgaaaaaaggttgctctgtcattttgttgaaaaatctgaacaacttacttgtcaatggtctgc aggggacagtaaatgaaatgaaacaaaattcagtggatgtaacatttttcatcaataaacctttgacagttaacatcaca ttctctacattcacaaccattgatccagttgacaaaactgttcttgctaaacgtgtacaaataccattaagtctaggata tgcaattaccatccataaatcccaagggatgactttaaggtctgtagtggtgaactgtgagaactgcattaatcctggtc aagttggtgtagggatttgtcgagctgtatcatctgatggactgtgcgtgttaaacttcaagaagtccctctgtaaggag cacccacaccctgtaaaagaattttatgataatgtaagtgtaggaaacactaatgaagacttgtcttgctgtaggacaaa gaaagcttcacaagacatggaaggtgatgatgatgatgatgatgatgatgatgatgcaaaaggtgatgacaaaagaactc gagatgaacacttatcacaatacattgattctgattactcggatgatgatttggaatacattgaaatcattgattcaaac ttttcagattcagatttaggtgaccaagaacatagaacttttgattttgaggccaggaaagcactagaagagtgtatgac ggattttatagatacacctgcagaggataacatgaaaaagtttaaagacttaattgaagccaatcacacaccttttcagg atttttacagcacccagaatactcacatgaagaattttcttaatcaagccttcccaccaaatgtaacttattcgaacaaa aatacaaatgaatttttcaaattatttcaacattatatgtccagtcaggagtataaacaatcagctgagtccctattatc cttgtataaagttcctacaaatggtccagaatttcagcttttaagttgtgtcctgttttacatagagaagaagaacttac taagtattcatgagaaattagagcttgatgtacatgtaccacattcaaagagatttggggatgaacatgtgatgtcacct gggggtagagggaaagttagatatattgcaggatatgtagtagcaaaagtgaggtaccgtatttcgaagaacttgagaaa tgccctttttgcgaaaggcaaagaggaaactgtaaaaaagcttcaggcaaatatcaaaatgttaaatttcctgtgtattt cttattatgaagaaatctcacattctaccgaagacagtgagagtttacaagaaacagcaaggaaacaaaataacagggaa ggattgacaaatgtaacagacaaaacattcaactttttcatgcacttggagaaagtttgtcgagaaaatctttcaaacga gtatgtattagagtatggcaaacatgtgttcagctttgtgatgtccaaaataaagaaagatcttcatttttttgaaatgt gggtggatctgttcagcagcagtaccatttattttgaagagcagtctaatgatgaaagttctacaggtcatgatgatgaa acagtgaatgtagtgataaaagatattgtgaatcagtgcgaaaatacatctgatttgtttgaatctgctgtttcgctttt tgtgaaagtgaactgtagccaatttagaagagattacctatccacactcaggagagaaaagataaaagctcttagaaaga aagtagtcaacaagtctaagagagtttcagaaactgtgaatatgaaatttatactgaaagatttatcacacagtaaacat gtttcacatctgcgacttaaggctgaagtaacacagaatcctcaatatctgacttttaagttatttacgaaaaaagattt atttgtgttgtgtaaggcatatggtctgaaaatgtcccttcacaagaaaaaagaagaaatatgtatgacattaaaagaca aaattttgaatagcagttgcataccatatcctgatgagatatctacagctggtagtggattatctgtagagtctgtccct agtgcctcagcagccttgccttctccttcttcttcttccgcgagtgcagtactgacttctgaaacattaagtgacacatg taatatatgtcagagggaggatacagatcatgaatggatctcctgcgataaatgtgatagttggttacatagaaagtgtg ctggaattaatgatgaaactgaatggatcagactcacagaggagggtgtacctttcatatgcaagaactgtcagtcttaa |
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Protein
| Protein ID | pfu_aug2.0_524.1_14253.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_524.1_14253.t1 MDSEQIIAFELAQKGHNLVICGQAGTGKTYLMKEITRRLRVKGKNVAVVCSTGIAATRFSDLGGVTVNKWAGILDGRHTN DEVLHLLRTDERFVENKQNILHTDTLVIDEISMISAKTLGQVQFLCQHLRNSSDLFGGMQIILSGDFYQLPPVSNELYGD FGHHCFKLKWFKEIFPHTIKLQTIHKQTEADLIKCVNECAVGAVSPDTEKFIKRVSRPISQDAVQLFARNIDADLYNYKK LNQEPGELKVYDSIDEGSAHYLGKFLAPRHLGLKKGCSVILLKNLNNLLVNGLQGTVNEMKQNSVDVTFFINKPLTVNIT FSTFTTIDPVDKTVLAKRVQIPLSLGYAITIHKSQGMTLRSVVVNCENCINPGQVGVGICRAVSSDGLCVLNFKKSLCKE HPHPVKEFYDNVSVGNTNEDLSCCRTKKASQDMEGDDDDDDDDDDAKGDDKRTRDEHLSQYIDSDYSDDDLEYIEIIDSN FSDSDLGDQEHRTFDFEARKALEECMTDFIDTPAEDNMKKFKDLIEANHTPFQDFYSTQNTHMKNFLNQAFPPNVTYSNK NTNEFFKLFQHYMSSQEYKQSAESLLSLYKVPTNGPEFQLLSCVLFYIEKKNLLSIHEKLELDVHVPHSKRFGDEHVMSP GGRGKVRYIAGYVVAKVRYRISKNLRNALFAKGKEETVKKLQANIKMLNFLCISYYEEISHSTEDSESLQETARKQNNRE GLTNVTDKTFNFFMHLEKVCRENLSNEYVLEYGKHVFSFVMSKIKKDLHFFEMWVDLFSSSTIYFEEQSNDESSTGHDDE TVNVVIKDIVNQCENTSDLFESAVSLFVKVNCSQFRRDYLSTLRREKIKALRKKVVNKSKRVSETVNMKFILKDLSHSKH VSHLRLKAEVTQNPQYLTFKLFTKKDLFVLCKAYGLKMSLHKKKEEICMTLKDKILNSSCIPYPDEISTAGSGLSVESVP SASAALPSPSSSSASAVLTSETLSDTCNICQREDTDHEWISCDKCDSWLHRKCAGINDETEWIRLTEEGVPFICKNCQS |
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