Gene
| Gene Model ID | pfu_aug2.0_524.1_14257 |
|---|---|
| Locus | scaffold524.1 : 67062 ... 92937 : - |
| To GenomeBrowser | scaffold524.1:67062..92937 |
| Genes list of scaffold | scaffold524.1 |
| Synonym | pfu_aug1.0_6611.1_52797 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_524.1_14257.t2 | 2 | 1 | Plant_tran | 80 | 102 | 4.9e-12 | 45.6 | 0.4 | 1500.0 | -1.7 |
| pfu_aug2.0_524.1_14257.t2 | 2 | 2 | Plant_tran | 474 | 661 | 4.9e-12 | 45.6 | 6.4e-15 | 2.4e-11 | 43.4 |
| pfu_aug2.0_524.1_14257.t2 | 1 | 1 | DDE_Tnp_4 | 493 | 659 | 9.5e-30 | 103.2 | 4.7e-33 | 1.8e-29 | 102.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_524.1_14257.t2 | gi|115694524|ref|XP_797119.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_524.1_14257.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_524.1_14257.t1 atgccaaagttacttggtgagaacattgatgaacatttcaaggagctagctttccagcaactagagggatattatgaact ggctgaggaactaatggattgtcaaatacctcccaaaccaaaggtatggaattatgcagctggttggactaaatatgacc cagtgacaggggaggccactcttgttgatttcccagaggaaaatgcctttatttttgatattgaagtccttgttaaagaa ggacattttcctactatggcaacagctctttctgccactcattggtattcatggtgtgctgactgccttatccaggatcg ttatcgttggatcaatcatcaaaaacttcacgatctcattccgttggaaactagcaaatcctccatcttccctcctaatg gagagtgggagaagaaaattatcgttggacacaatgtaggatttgatcgttcatttattaaggaacagtatttcattgaa aaaacaaaggctcgtttcattgacacaatgtcgttacatatagccacctgtggattgacaaatatgcagagagttctcta tcaggcagctaagaaaaatagcaatctaaaggttgtaagggaatacaatgaggctaaaagacaacgtaatgtatgggtaa agtacctcttattagtaccctga |
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| Transcript ID | pfu_aug2.0_524.1_14257.t2 |
| Definition | - |
>pfu_aug2.0_524.1_14257.t2 atgccaaagttacttggtgagaacattgatgaacatttcaaggagctagctttccagcaactagagggatattatgaact ggctgaggaactaatggattgtcaaatacctcccaaaccaaaggtatggaattatgcagctggttggactaaatatgacc cagtgacaggggaggccactcttgttgatttcccagaggaaaatgcctttatttttgatattgaagtccttgttaaagaa ggacattttcctactatggcaacagctctttctgccactcattggtattcatggtgtgctgactgccttatccaggatcg ttatcgttggatcaatcatcaaaaacttcacgatctcattccgttggaaactagcaaatcctccatcttccctcctaatg gagagtgggagaagaaaattatcgttggacacaatgtaggatttgatcgttcatttattaaggaacagtatttcattgaa aaaacaaaggctcgtttcattgacacaatgtcgttacatatagccacctgtggattgacaaatatgcagagagttctcta tcaggcagctaagaaaaatagcaatctaaaggttgtaagggaatacaatgaggctaaaagacaacgtaatgtatggattg taagacatccgttcgtacagctctttactgtgcatggatttataagatttataagcagcgacgatggatcgaccacaaag caagtccctttagcattcatatccatgtcaagaagacagacaacagactacattaagaagatcctgatgaaaaggtcatc agcactcacaatagaggaccaaatggagcatcgacggaccactagcaagctagaggtgggattaggtgcccgggaagaga atgatttaaagatgggcataaccattttgatgggaagacggaaaaagaaagcagcagcattgcttctgttaatgcacata agagagcaggaggaggaactttttctattattacaggacaaaaataacaaaagggacaggaggaaaccaagaacttcatg ggttcgcaaatggctgtccgataagagaagggaacgctacggacattacaccactcttctcaatgaattaacaacagagg atgagaaggccttctataactacacaagactccctaagggtctctatgatgagttgttgggaagaatagaagggagaata aagaaaaaagacacttggttcaggaagtctctctctcctggtcttaagctttcaatcactctacgacatctagcatgcgg cgacaattatgccagtcttgcctacaatttcagggttgctccaaactcaatatctgtgtttataagtgaagtatgcgatg caataaaagccgaatttgctactgaggttatccagtgccctaccgcggctgaagagtggaatgccattgccaatctattt gagaaaagatggcaattcccacactgttgtggtgctctcgatggaaagcatgtggccatcatctgccctcctaacactgg ttcagagtataggaactacaaaggcttcttctcaattgtcctcatggccttagtcgatgccgactataagtttatttgga tagacgttggttctgatggatccagtaacgatgccagtatatacaatggatcagaattgaaggaaggtcttgagagccca aacaacatgttcaatctccctgatgataaggctttacctagtgatgatgttgctgtcccatattacatagtaggagacaa tgcttttggtataactaaacgcctgatgaacccgttccctatccgaaacatggaacatcatgagagaatattcaactaca gactatcaagagctaggcgtgtagttgagaatgccttcgggattttggctcacagattccaaattttactgaggaccatg aaccagaggccagagtcttgcagaaaaattattacaacatgtgtgatacttcacaatctcattagactgagatacccagc caaccacaacaatctgattgatattgaggaccaaagccagaatatcattcctggggcatggaggaataacaaagtgatga tggatgtttaccacgagagagcaaggaacgcgggaacacaggaaggacgtcaaattagacgatatctaggacactacttt acctcagctattggtgcggtgccttggcaggagaagatgatcttgtaa |
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Protein
| Protein ID | pfu_aug2.0_524.1_14257.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_524.1_14257.t1 MPKLLGENIDEHFKELAFQQLEGYYELAEELMDCQIPPKPKVWNYAAGWTKYDPVTGEATLVDFPEENAFIFDIEVLVKE GHFPTMATALSATHWYSWCADCLIQDRYRWINHQKLHDLIPLETSKSSIFPPNGEWEKKIIVGHNVGFDRSFIKEQYFIE KTKARFIDTMSLHIATCGLTNMQRVLYQAAKKNSNLKVVREYNEAKRQRNVWVKYLLLVP |
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| Protein ID | pfu_aug2.0_524.1_14257.t2 |
| Definition | - |
>pfu_aug2.0_524.1_14257.t2 MPKLLGENIDEHFKELAFQQLEGYYELAEELMDCQIPPKPKVWNYAAGWTKYDPVTGEATLVDFPEENAFIFDIEVLVKE GHFPTMATALSATHWYSWCADCLIQDRYRWINHQKLHDLIPLETSKSSIFPPNGEWEKKIIVGHNVGFDRSFIKEQYFIE KTKARFIDTMSLHIATCGLTNMQRVLYQAAKKNSNLKVVREYNEAKRQRNVWIVRHPFVQLFTVHGFIRFISSDDGSTTK QVPLAFISMSRRQTTDYIKKILMKRSSALTIEDQMEHRRTTSKLEVGLGAREENDLKMGITILMGRRKKKAAALLLLMHI REQEEELFLLLQDKNNKRDRRKPRTSWVRKWLSDKRRERYGHYTTLLNELTTEDEKAFYNYTRLPKGLYDELLGRIEGRI KKKDTWFRKSLSPGLKLSITLRHLACGDNYASLAYNFRVAPNSISVFISEVCDAIKAEFATEVIQCPTAAEEWNAIANLF EKRWQFPHCCGALDGKHVAIICPPNTGSEYRNYKGFFSIVLMALVDADYKFIWIDVGSDGSSNDASIYNGSELKEGLESP NNMFNLPDDKALPSDDVAVPYYIVGDNAFGITKRLMNPFPIRNMEHHERIFNYRLSRARRVVENAFGILAHRFQILLRTM NQRPESCRKIITTCVILHNLIRLRYPANHNNLIDIEDQSQNIIPGAWRNNKVMMDVYHERARNAGTQEGRQIRRYLGHYF TSAIGAVPWQEKMIL |
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