Gene
| Gene Model ID | pfu_aug2.0_524.1_14259 |
|---|---|
| Locus | scaffold524.1 : 116034 ... 143227 : - |
| To GenomeBrowser | scaffold524.1:116034..143227 |
| Genes list of scaffold | scaffold524.1 |
| Synonym | pfu_aug1.0_17.1_14695 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_524.1_14259.t1 | 5 | 1 | WD40 | 28 | 45 | 7.3e-10 | 38.3 | 0.0018 | 27.0 | 4.8 |
| pfu_aug2.0_524.1_14259.t1 | 5 | 2 | WD40 | 67 | 96 | 7.3e-10 | 38.3 | 7.5e-10 | 1.1e-05 | 25.0 |
| pfu_aug2.0_524.1_14259.t1 | 5 | 3 | WD40 | 133 | 159 | 7.3e-10 | 38.3 | 0.19 | 2800.0 | -1.6 |
| pfu_aug2.0_524.1_14259.t1 | 5 | 4 | WD40 | 173 | 196 | 7.3e-10 | 38.3 | 0.0073 | 110.0 | 2.9 |
| pfu_aug2.0_524.1_14259.t1 | 5 | 5 | WD40 | 219 | 228 | 7.3e-10 | 38.3 | 0.72 | 11000.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_524.1_14259.t1 | gi|676464046|ref|XP_009056796.1| | hypothetical protein LOTGIDRAFT_216750 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_524.1_14259.t1 | gi|241632459|ref|XP_002408602.1| | WD-repeat protein, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_524.1_14259.t1 | gi|524874516|ref|XP_005093993.1| | PREDICTED: DDB1- and CUL4-associated factor 12-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_524.1_14259.t1 | gi|115629112|ref|XP_791553.2| | PREDICTED: DDB1- and CUL4-associated factor 12 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_524.1_14259.t1 | gi|749734029|ref|XP_011149143.1| | PREDICTED: DDB1- and CUL4-associated factor 12 [Harpegnathos saltator] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_524.1_14259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_524.1_14259.t1 atggatgtaacgactggacgccagcttcacatcccgtccctgaatagtagcagtgatagtcagcctgcagactgtccttg tggtatacatagtatcgccctcaatccctcacgttctctatttgctaccggagcagagcatactaacgatttagcagtct atatgcttcctacttttgatcctgtcatggtcggagagggagggcatacagactggattttcgatatgcagtggatagat gatgaattcattgttacaggatctagggacagtaaacttgcattatggcgtgtagacgaggagatttgtgatgttcagaa gtcagatattaccaagtctatgcctgattataccgttaggaagcctgagatttcaacaatgtgcgagaaagctcagaaag tcagagcactctcttacaatgatgagaggaaggaacttgccgtgctgtcattaaatgcatattttcatttatgggatgtg gaaactttcacagcaaaaagctgcaggaaattattccataccagagaaaatgtgtgcatggctttgtcgaaggagaagtg tctgtttgctataggttcacaatctcatataaacctggtggatccgagatcccctaatactttaaccaccatcatctcta agtacagaggacaaggtgtgaggtctgtgacgtttcgtgataacatcctcactataggcactggagttggtgttatattg ttctttgacatcaatgccggtaaatacctggagagtagctgtagtcatataacaaactttactgtgggtagaggatggct gctgcgtgatgagacatatagagacttttttatggactctacctacccaagtgctatatacactcatcagtatgacaaag gtggcaccaggctgtttgctgcaggaggacctctgcctgcaggactctggggaaattatgccggtgaccaaaatgtgatg tctattcctgtgatgtttattcctgtgatgtcaggacactttcgaacaatggaggcccatccagtatcatga |
|
Protein
| Protein ID | pfu_aug2.0_524.1_14259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_524.1_14259.t1 MDVTTGRQLHIPSLNSSSDSQPADCPCGIHSIALNPSRSLFATGAEHTNDLAVYMLPTFDPVMVGEGGHTDWIFDMQWID DEFIVTGSRDSKLALWRVDEEICDVQKSDITKSMPDYTVRKPEISTMCEKAQKVRALSYNDERKELAVLSLNAYFHLWDV ETFTAKSCRKLFHTRENVCMALSKEKCLFAIGSQSHINLVDPRSPNTLTTIISKYRGQGVRSVTFRDNILTIGTGVGVIL FFDINAGKYLESSCSHITNFTVGRGWLLRDETYRDFFMDSTYPSAIYTHQYDKGGTRLFAAGGPLPAGLWGNYAGDQNVM SIPVMFIPVMSGHFRTMEAHPVS |
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