Gene
| Gene Model ID | pfu_aug2.0_528.1_27502 |
|---|---|
| Locus | scaffold528.1 : 55386 ... 78484 : + |
| To GenomeBrowser | scaffold528.1:55386..78484 |
| Genes list of scaffold | scaffold528.1 |
| Synonym | pfu_aug1.0_20591.1_04093 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_528.1_27502.t1 | 6 | 1 | RCC1_2 | 34 | 50 | 9.7e-35 | 117.4 | 0.088 | 260.0 | 1.3 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 1 | RCC1 | 41 | 84 | 0.0 | 197.0 | 3.2e-09 | 9.6e-06 | 25.7 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 2 | RCC1_2 | 86 | 104 | 9.7e-35 | 117.4 | 7.0e-06 | 0.021 | 14.4 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 2 | RCC1 | 94 | 143 | 0.0 | 197.0 | 3.5e-15 | 1.0e-11 | 44.8 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 3 | RCC1_2 | 132 | 159 | 9.7e-35 | 117.4 | 2.6e-14 | 7.7e-11 | 41.3 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 3 | RCC1 | 146 | 196 | 0.0 | 197.0 | 9.3e-15 | 2.7e-11 | 43.4 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 4 | RCC1_2 | 184 | 212 | 9.7e-35 | 117.4 | 1.9e-11 | 5.5e-08 | 32.2 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 4 | RCC1 | 199 | 248 | 0.0 | 197.0 | 1.0e-17 | 3.1e-14 | 52.9 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 5 | RCC1_2 | 237 | 264 | 9.7e-35 | 117.4 | 4.5e-13 | 1.3e-09 | 37.3 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 5 | RCC1 | 251 | 294 | 0.0 | 197.0 | 5.2e-13 | 1.6e-09 | 37.8 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 6 | RCC1_2 | 298 | 312 | 9.7e-35 | 117.4 | 0.00059 | 1.8 | 8.3 |
| pfu_aug2.0_528.1_27502.t1 | 6 | 6 | RCC1 | 305 | 312 | 0.0 | 197.0 | 0.026 | 77.0 | 3.6 |
| pfu_aug2.0_528.1_27502.t1 | 2 | 1 | BTB | 363 | 436 | 6.7e-13 | 48.6 | 2.0e-15 | 5.8e-12 | 45.5 |
| pfu_aug2.0_528.1_27502.t1 | 2 | 2 | BTB | 438 | 466 | 6.7e-13 | 48.6 | 0.13 | 380.0 | 1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_528.1_27502.t1 | gi|676452772|ref|XP_009053138.1| | hypothetical protein LOTGIDRAFT_214601 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_528.1_27502.t1 | gi|432930911|ref|XP_004081521.1| | PREDICTED: RCC1 and BTB domain-containing protein 1 [Oryzias latipes] | 0.0 |
| pfu_aug2.0_528.1_27502.t1 | gi|556992484|ref|XP_006000619.1| | PREDICTED: RCC1 and BTB domain-containing protein 1 isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_528.1_27502.t1 | gi|327261091|ref|XP_003215365.1| | PREDICTED: RCC1 and BTB domain-containing protein 1 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_528.1_27502.t1 | gi|602669908|ref|XP_007440486.1| | PREDICTED: RCC1 and BTB domain-containing protein 1 isoform X1 [Python bivittatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_528.1_27502.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_528.1_27502.t1 atggtagacgccaataagtggcctatttttagcattctaagctatgaggagctcgtcaagattaaacgtatttgtgtgtt tggaagctccggtaatgaagctctctacatagatgacgaggatgatgtctatgccataggatccaactgtagcagctgcc taggcttgggtgatacacacagtagctttgagccgagaaaagttgaggcgttatgtaagaagaaaataatggacatagct tttggaagtggaccacatgttttagcagtatctagtaccggtgatatgtacagttggggccataatggatattgccagct gggtaatggtggatcaagtcaagggttagcgccagtacttataacggcaaatttacagggcaagaaaattctcaaggttg catgcgggagtcaccactcgttggccttgtctcaggaaggggagatttatgcttggggacagaataactgcggtcaagtt ggttctggaaccactacaaatcaacccactccacgtaaagtgatggctgtaataggtaccaaggtggcgtcatccatagc atgtggacagacttcctctatggccctgatggaaaatggagaggtatatggatggggttataatgggaatggtcagctag gactcggaaacaatgtaaatcagccgaacccttgccgcgttcaacaattacaaaatatcatcatatgtcagcttgcctgt ggctatgcccataccttagctttgtcagacgagggcgttctgtacacatggggagctaactcatacggacagctgggaac aggaaataaggctaaccaagtctcaccatccaaggtcgtcgtcaatggagatagactcgtcgagatagcggccagccatt atgcccacatatcagcggccatgacagagactgggcgtgtatacatgtggggtcagtgtcgagggcagtcactcacatcc cctttcctcacacggttccaatgtacagatgatgtgtttgcagccttcagtgctcctttggtgacatggagaacatattg tgttgacaagatgcaaggagctcagatcgctgaatgtattgccaaatgtgaacatttccgctccatgttccagtcatgct gggatgaagatgagaaagattctatagaaataaaccagtatccctacactgtgtacagagctttcttggaatatttatat acagaccaagtacaactgaaaccagaacaagctataggtttgctggatcttgccaatgcttactgtgagcccacactaaa acagcactgtgaaaagataatcaaaaaaggaatcactacggaaaatgtagccatgttgtatgccgcagctatcaagtttg aagccaaggagctggagggcttttgtttccgatttgcgttaaatcacatgacggcagtgacccaaacagaggcgttcgga cacttagacgagtgtgtggtcaaggaattcatcaagaaagcagcactgtctggggcatttcgatactga |
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Protein
| Protein ID | pfu_aug2.0_528.1_27502.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_528.1_27502.t1 MVDANKWPIFSILSYEELVKIKRICVFGSSGNEALYIDDEDDVYAIGSNCSSCLGLGDTHSSFEPRKVEALCKKKIMDIA FGSGPHVLAVSSTGDMYSWGHNGYCQLGNGGSSQGLAPVLITANLQGKKILKVACGSHHSLALSQEGEIYAWGQNNCGQV GSGTTTNQPTPRKVMAVIGTKVASSIACGQTSSMALMENGEVYGWGYNGNGQLGLGNNVNQPNPCRVQQLQNIIICQLAC GYAHTLALSDEGVLYTWGANSYGQLGTGNKANQVSPSKVVVNGDRLVEIAASHYAHISAAMTETGRVYMWGQCRGQSLTS PFLTRFQCTDDVFAAFSAPLVTWRTYCVDKMQGAQIAECIAKCEHFRSMFQSCWDEDEKDSIEINQYPYTVYRAFLEYLY TDQVQLKPEQAIGLLDLANAYCEPTLKQHCEKIIKKGITTENVAMLYAAAIKFEAKELEGFCFRFALNHMTAVTQTEAFG HLDECVVKEFIKKAALSGAFRY |
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