Gene
| Gene Model ID | pfu_aug2.0_528.1_27504 |
|---|---|
| Locus | scaffold528.1 : 91446 ... 100589 : + |
| To GenomeBrowser | scaffold528.1:91446..100589 |
| Genes list of scaffold | scaffold528.1 |
| Synonym | pfu_aug1.0_4566.1_44974 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_528.1_27504.t1 | 1 | 1 | RRM_1 | 51 | 120 | 2.0e-16 | 59.3 | 1.0e-19 | 3.9e-16 | 58.4 |
| pfu_aug2.0_528.1_27504.t1 | 1 | 1 | RRM_6 | 51 | 121 | 7.5e-13 | 48.2 | 3.8e-16 | 1.4e-12 | 47.4 |
| pfu_aug2.0_528.1_27504.t1 | 1 | 1 | RRM_5 | 69 | 125 | 3.5e-09 | 36.3 | 1.5e-12 | 5.6e-09 | 35.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_528.1_27504.t1 | gi|260797536|ref|XP_002593758.1| | hypothetical protein BRAFLDRAFT_251578 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_528.1_27504.t1 | gi|390345709|ref|XP_787527.3| | PREDICTED: RNA-binding protein 8A [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_528.1_27504.t1 | gi|118787932|ref|XP_316392.3| | AGAP006365-PA [Anopheles gambiae str. PEST] | 0.0 |
| pfu_aug2.0_528.1_27504.t1 | gi|170042888|ref|XP_001849141.1| | RNA-binding protein 8A [Culex quinquefasciatus] | 0.0 |
| pfu_aug2.0_528.1_27504.t1 | gi|157114117|ref|XP_001652167.1| | AAEL006748-PA [Aedes aegypti] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_528.1_27504.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_528.1_27504.t1 atggcggacgttttggatctacacgaaatcgaagaaggaggagacgagtttgaagttgatgaagagggagatcagggact tcagaaattgaaagaaaaggcaaagaaaagaaaaggacgaggatttggttcagctgttgaggggtggatcctgtttgtga caggggtgcatgaagaagcccaggaggacgatgtcatggataaatttgcagattacggtgcaataaaaaatcttcatctc aatcttgacagacgaacaggatttttaaagggctatgcattggtagagtatgaaaccttcaaagaagcccaggcagcaat ggattcattaaatggttcagaaatcctcggtcaaaaaattaatgttgattggtgttttgttagaggtccacgcaaaggaa aaggaaggagtcgagatgatcgtaggaggagataa |
|
Protein
| Protein ID | pfu_aug2.0_528.1_27504.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_528.1_27504.t1 MADVLDLHEIEEGGDEFEVDEEGDQGLQKLKEKAKKRKGRGFGSAVEGWILFVTGVHEEAQEDDVMDKFADYGAIKNLHL NLDRRTGFLKGYALVEYETFKEAQAAMDSLNGSEILGQKINVDWCFVRGPRKGKGRSRDDRRRR |
|