Gene
| Gene Model ID | pfu_aug2.0_528.1_27512 |
|---|---|
| Locus | scaffold528.1 : 293461 ... 296666 : - |
| To GenomeBrowser | scaffold528.1:293461..296666 |
| Genes list of scaffold | scaffold528.1 |
| Synonym | pfu_aug1.0_7519.1_52988 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_528.1_27512.t1 | 1 | 1 | PB1 | 3 | 53 | 5.5e-07 | 29.1 | 4.1e-10 | 1.0e-06 | 28.3 |
| pfu_aug2.0_528.1_27512.t1 | 2 | 1 | PDZ | 115 | 195 | 6.4e-26 | 90.3 | 1.3e-14 | 3.2e-11 | 43.2 |
| pfu_aug2.0_528.1_27512.t1 | 2 | 1 | PDZ_2 | 147 | 188 | 7.5e-06 | 25.7 | 0.00012 | 0.3 | 11.0 |
| pfu_aug2.0_528.1_27512.t1 | 2 | 2 | PDZ | 265 | 353 | 6.4e-26 | 90.3 | 3.3e-15 | 8.3e-12 | 45.1 |
| pfu_aug2.0_528.1_27512.t1 | 2 | 2 | PDZ_2 | 297 | 342 | 7.5e-06 | 25.7 | 5.6e-05 | 0.14 | 12.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_528.1_27512.t1 | gi|676445896|ref|XP_009050902.1| | hypothetical protein LOTGIDRAFT_158981 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_528.1_27512.t1 | gi|524879281|ref|XP_005096318.1| | PREDICTED: partitioning defective 6 homolog gamma-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_528.1_27512.t1 | gi|524879283|ref|XP_005096319.1| | PREDICTED: partitioning defective 6 homolog gamma-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_528.1_27512.t1 | gi|269784951|ref|NP_001161627.1| | Par-6-like protein [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_528.1_27512.t1 | gi|657805555|ref|XP_008329928.1| | PREDICTED: partitioning defective 6 homolog gamma [Cynoglossus semilaevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_528.1_27512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_528.1_27512.t1 ttttgagaagcttctgggacagctccacagtgtaagcgatggggagtttgtcgtgacgtacacagatacacagggagatc ttctgccaatcaacaatgacgataactaccagaaggcccttactacagccaaacctctactcagggtcatggtccaacgt aaaggagaaggctatgaacagatgaatgggtatggaaccatacagaaaaagaaaaaagcaatagggaaattgatgagcaa tgataccaatgctagaccaaaaattgcaataggaatgcctgaggatttccgtcgagtgtccgccattattgatgttgata tcgtgcccgagcatcatcgtagagtcaaactgatgaagaacggctctgataagcctcttggtttctacatcagagacggc acaagtgttcgagtgacaccccatggacttgaaaaagtacctgggatctttatttctagattggtgccaggaggtttagc ggagagtaccggactgttagctgtaaatgatgaggttttagaagttaacgggattgaagttgccggaaaaactctcgatc aagtgacggacatgatggtcnaacccaaatttttctggacaatgcaaagaaaatgagaaggctatgaacagatgaatggg tatggaaccatacagaaaaagaaaaaagcaatagggaaattgattagcaatgatactaatgctagaccaaaaatcgcaat aggaatgcctgaggatttccgtcgagtgtccgccattattgatgttgatatcgtgcccgagcatcatcgtagagtcaaac tgatgaagaatggttctgataagcctcttggtttctacatcagagacggcacaagtgttcgagtgacgccccatggactt gaaaaagtacctgggatctttatttctagattggtgccaggaggtttagcggagagtaccggactgttagctgtaaatga cgaggttttagaagttaacgggattgaagttgccggaaaaactctcgatcaagtgacagacatgatggttgcaaacagtt caaatcttattattacggttaagccagtgaatcaacgtctaacacttgccccacagagaggaggggtcggcagacattca caaatgtcgcagctttcgcagtcatcttctcaaatttcacataacagctcccatcattcttcaaaatcgttcgatagtga tctgcccgaacacgatgacgaagacgatgaagttcatgaccatttattacctgcaaacaaaagtacaaaaagcgatacgc gaagcgcaaagagcgatacgcacagtatcaaaagtgactccaataaaagcgacaaagacagcgccgtggtcacgttgtag |
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Protein
| Protein ID | pfu_aug2.0_528.1_27512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_528.1_27512.t1 FEKLLGQLHSVSDGEFVVTYTDTQGDLLPINNDDNYQKALTTAKPLLRVMVQRKGEGYEQMNGYGTIQKKKKAIGKLMSN DTNARPKIAIGMPEDFRRVSAIIDVDIVPEHHRRVKLMKNGSDKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLA ESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVXPKFFWTMQRKXEGYEQMNGYGTIQKKKKAIGKLISNDTNARPKIAI GMPEDFRRVSAIIDVDIVPEHHRRVKLMKNGSDKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVND EVLEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPVNQRLTLAPQRGGVGRHSQMSQLSQSSSQISHNSSHHSSKSFDSD LPEHDDEDDEVHDHLLPANKSTKSDTRSAKSDTHSIKSDSNKSDKDSAVVTL |
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