Gene
| Gene Model ID | pfu_aug2.0_529.1_30858 |
|---|---|
| Locus | scaffold529.1 : 11130 ... 13745 : - |
| To GenomeBrowser | scaffold529.1:11130..13745 |
| Genes list of scaffold | scaffold529.1 |
| Synonym | pfu_aug1.0_4860.1_45060 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_529.1_30858.t1 | 2 | 1 | PMP22_Claudin | 13 | 159 | 2.6e-12 | 46.7 | 4.9e-15 | 6.6e-12 | 45.4 |
| pfu_aug2.0_529.1_30858.t1 | 1 | 1 | L_HGMIC_fpl | 15 | 129 | 4.7e-07 | 29.9 | 3.5e-10 | 4.7e-07 | 29.9 |
| pfu_aug2.0_529.1_30858.t1 | 1 | 1 | Claudin_2 | 21 | 163 | 4.4e-10 | 39.5 | 9.2e-13 | 1.2e-09 | 38.0 |
| pfu_aug2.0_529.1_30858.t1 | 2 | 2 | PMP22_Claudin | 145 | 169 | 2.6e-12 | 46.7 | 0.23 | 300.0 | 0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_529.1_30858.t1 | gi|557007169|ref|XP_006004956.1| | PREDICTED: lens fiber membrane intrinsic protein-like [Latimeria chalumnae] | 2.0e-07 |
| pfu_aug2.0_529.1_30858.t1 | gi|591359860|ref|XP_007052913.1| | PREDICTED: lens fiber membrane intrinsic protein-like [Chelonia mydas] | 5.0e-07 |
| pfu_aug2.0_529.1_30858.t1 | gi|558126102|ref|XP_006115271.1| | PREDICTED: lens fiber membrane intrinsic protein-like [Pelodiscus sinensis] | 1.0e-06 |
| pfu_aug2.0_529.1_30858.t1 | gi|617375441|ref|XP_007541436.1| | PREDICTED: lens fiber membrane intrinsic protein-like [Poecilia formosa] | 1.0e-06 |
| pfu_aug2.0_529.1_30858.t1 | gi|657573528|ref|XP_008290428.1| | PREDICTED: lens fiber membrane intrinsic protein-like [Stegastes partitus] | 9.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_529.1_30858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_529.1_30858.t1 atgaagctcttacttcgcaatattacgtggccattagtattatctctaattctgagttttttcgcctttgtgttgcttat atttggcgtggcatctccattttggatacacgataagataggatccacaaaaagcaatcttggactttgggatagctgta tgaaacatgggaaaaacgattcgaaatgcgtaaagttcacaagttccgaagacaccctgccggcagctaagactttcctg ctgttaagtctgattctcctgatcgccgccattggatgtaacttgatacgattcctctctctcagatcaaacgtctacct atgtgttacaacaagcatcattcttggcatagcaggtatcttcaccatgataggtattgccttgtacgcccacgtcatac gtaacgtcaccggccgttatcacttctcactggcgttctccgtgctttcccttctactctcactaacagccggggctctg tccctcctcgaaatacgatgttctggagaggacgaggtcctctccgtcagcggtagcaggaagcacagtgaagggaacgt gaacgagatcccctcatcttcctattcttcggagcaacattctaaagtaacatccgagcaaggaaaagaagaaagttacc tactgtctacaatcagagacgagggcagcaatgatgtcaacgagagctcaacagacaatgacgtaactagtgatataccg acaaagaacgttactcaaacaacgcatcaatag |
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Protein
| Protein ID | pfu_aug2.0_529.1_30858.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_529.1_30858.t1 MKLLLRNITWPLVLSLILSFFAFVLLIFGVASPFWIHDKIGSTKSNLGLWDSCMKHGKNDSKCVKFTSSEDTLPAAKTFL LLSLILLIAAIGCNLIRFLSLRSNVYLCVTTSIILGIAGIFTMIGIALYAHVIRNVTGRYHFSLAFSVLSLLLSLTAGAL SLLEIRCSGEDEVLSVSGSRKHSEGNVNEIPSSSYSSEQHSKVTSEQGKEESYLLSTIRDEGSNDVNESSTDNDVTSDIP TKNVTQTTHQ |
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