Gene
| Gene Model ID | pfu_aug2.0_529.1_30860 |
|---|---|
| Locus | scaffold529.1 : 24547 ... 47495 : - |
| To GenomeBrowser | scaffold529.1:24547..47495 |
| Genes list of scaffold | scaffold529.1 |
| Synonym | pfu_aug1.0_4860.1_45060 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_529.1_30860.t1 | 2 | 1 | AMP-binding | 101 | 203 | 0.0 | 182.9 | 1.6e-28 | 1.2e-24 | 86.5 |
| pfu_aug2.0_529.1_30860.t1 | 2 | 1 | AMP-binding_C | 233 | 261 | 1.6e-14 | 54.5 | 1.5 | 11000.0 | -2.6 |
| pfu_aug2.0_529.1_30860.t1 | 2 | 2 | AMP-binding | 241 | 420 | 0.0 | 182.9 | 5.4e-31 | 4.0e-27 | 94.6 |
| pfu_aug2.0_529.1_30860.t1 | 2 | 2 | AMP-binding_C | 430 | 508 | 1.6e-14 | 54.5 | 6.8e-18 | 5.1e-14 | 52.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_529.1_30860.t1 | gi|597741284|ref|XP_007232780.1| | PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_529.1_30860.t1 | gi|724924151|ref|XP_010381973.1| | PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial isoform X3 [Rhinopithecus roxellana] | 0.0 |
| pfu_aug2.0_529.1_30860.t1 | gi|675714272|ref|XP_008962316.1| | PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial isoform X2 [Pan paniscus] | 0.0 |
| pfu_aug2.0_529.1_30860.t1 | gi|530565300|ref|XP_005279208.1| | PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_529.1_30860.t1 | gi|291228894|ref|XP_002734410.1| | PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_529.1_30860.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_529.1_30860.t1 atgagtcgagtatttgcacatttcagatcactgacaagagctctagcttattctaagcattgcagtaatcacagaagagc atgcttgtgtataaatcacaggagagaatattcgtcaagtgaaagatatcatgcagatgccttcaatcagtcgatcaaca gtccagaggaattttgggctgaggctgcagagggcattgtctggcataaaaagtgggacaaagtgttagataattcccaa cagcctttcacaaaatggtttgtaggaggggagatgaacacatgttacaatgctgtagatcgtcatgtagatcagggtaa tggtgagcacacagctatcatatttgacagtcctataaccaaacaagtcagtcggctcacatacaggcaactccagcaag aggtcagcaagtttgccggagtgttgcagagttatggtgtggagaagggagacagagtgttaatctatatgccaatgatc ccagaggccatcattgccatgttaggtactgttagacttggtgccattcactctctggtgtttggtggctttgcagcgaa ggaactttctgtaaggatagagcatgccaagccaaaggttgtagtaagtgctaactgtggagtagagcctggaagagagg taccatataaaccaatgctggatgatgccttagccatgtgtgacttcaaacctaaacattgtatcatctataacagacct aaggagcatgatgtggcttctatgttcgtggctcctacggccatcagagctattcttagagaggatcctgaagcaaaatt tgctcaaaagtttttgcctttagacaaattccgtgccttgtttgtagcgggggaacactgtgataaagagaccatggagt gggccagacacgccctcagtagtcctatactagacaactggtggcaaacagaaactggctgggctatcacttcaacatgt gttggtctgaatatggaactacgtcctcccactggtgcttcagggaaagctgtccctggatggaatgtaaaggtgttatc aaaagacggaagtgaagccaaacctatggaactaggagatattgttgtcaaactacctcttccaccaggtgccttcagta gtttgtgggaaaatgaagatagattcagggatacttatttcaagtccaaaccagggtactatgacacaatggatgcaggg tacatggatgaggaaggtcatgtatttgtcatgtccagaagtgatgatgtcataaatgtagctggccatcggttatcaac aggtgcccttgaggaggcaataatcggtagtgatgacattgctgaagctgctgttgttggtatcccagatgaactgaaag gccaagtgcctcttgggttgtgtgtactcaagcatggggttgagaaatctcatgaagatgttataaaaggtgttatagat attgtgaggaccaatatagggcctgtggccagctttaaactcgctgttatcgtaccaaaactccctaaaacaagatctgg taaaatagctcgtaacacaatcactgcaatggctgccggacaaccattcaagatgccggtaacgatagaagatgcctctg tataccctgccattaaacaagctctccaggctataggctttgctaaagatcctccaccctcctga |
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Protein
| Protein ID | pfu_aug2.0_529.1_30860.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_529.1_30860.t1 MSRVFAHFRSLTRALAYSKHCSNHRRACLCINHRREYSSSERYHADAFNQSINSPEEFWAEAAEGIVWHKKWDKVLDNSQ QPFTKWFVGGEMNTCYNAVDRHVDQGNGEHTAIIFDSPITKQVSRLTYRQLQQEVSKFAGVLQSYGVEKGDRVLIYMPMI PEAIIAMLGTVRLGAIHSLVFGGFAAKELSVRIEHAKPKVVVSANCGVEPGREVPYKPMLDDALAMCDFKPKHCIIYNRP KEHDVASMFVAPTAIRAILREDPEAKFAQKFLPLDKFRALFVAGEHCDKETMEWARHALSSPILDNWWQTETGWAITSTC VGLNMELRPPTGASGKAVPGWNVKVLSKDGSEAKPMELGDIVVKLPLPPGAFSSLWENEDRFRDTYFKSKPGYYDTMDAG YMDEEGHVFVMSRSDDVINVAGHRLSTGALEEAIIGSDDIAEAAVVGIPDELKGQVPLGLCVLKHGVEKSHEDVIKGVID IVRTNIGPVASFKLAVIVPKLPKTRSGKIARNTITAMAAGQPFKMPVTIEDASVYPAIKQALQAIGFAKDPPPS |
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