Gene
Gene Model ID | pfu_aug2.0_529.1_30865 |
---|---|
Locus | scaffold529.1 : 81196 ... 93389 : + |
To GenomeBrowser | scaffold529.1:81196..93389 |
Genes list of scaffold | scaffold529.1 |
Synonym | pfu_aug1.0_2596.1_66387 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_529.1_30865.t1 | 1 | 1 | DUF500 | 48 | 171 | 2.8026e-45 | 152.5 | 0.0 | 4.2039e-45 | 152.0 |
pfu_aug2.0_529.1_30865.t1 | 1 | 1 | SH3_1 | 257 | 304 | 2.4e-15 | 55.6 | 1.4e-18 | 5.3e-15 | 54.5 |
pfu_aug2.0_529.1_30865.t1 | 1 | 1 | SH3_2 | 257 | 309 | 1.8e-10 | 40.1 | 7.7e-14 | 2.9e-10 | 39.4 |
pfu_aug2.0_529.1_30865.t1 | 1 | 1 | SH3_9 | 258 | 308 | 5.0e-12 | 45.2 | 2.1e-15 | 8.0e-12 | 44.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_529.1_30865.t1 | gi|676442232|ref|XP_009049742.1| | hypothetical protein LOTGIDRAFT_141887 [Lottia gigantea] | 0.0 |
pfu_aug2.0_529.1_30865.t1 | gi|507701663|ref|XP_004644701.1| | PREDICTED: SH3 domain-containing YSC84-like protein 1 isoform X2 [Octodon degus] | 0.0 |
pfu_aug2.0_529.1_30865.t1 | gi|507701667|ref|XP_004644702.1| | PREDICTED: SH3 domain-containing YSC84-like protein 1 isoform X3 [Octodon degus] | 0.0 |
pfu_aug2.0_529.1_30865.t1 | gi|533182548|ref|XP_005404392.1| | PREDICTED: SH3 domain-containing YSC84-like protein 1 isoform X2 [Chinchilla lanigera] | 0.0 |
pfu_aug2.0_529.1_30865.t1 | gi|533182546|ref|XP_005404391.1| | PREDICTED: SH3 domain-containing YSC84-like protein 1 isoform X1 [Chinchilla lanigera] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_529.1_30865.t1 |
---|---|
Definition | - |
>pfu_aug2.0_529.1_30865.t1 atgaaagcaaagggattggccatactgacagtagtaagagctgggttcctagtgacagccagaggggggagtggtattgt tatagcaaagttggctgatgatctcattgatgcagaatggtcggcccctgcagctataggcatggcaggacttggagggg gctttgagattggagcagaggtgacagactttgtgatcatcctaaattctcgttctgccgtggaagctttctccaaggga ggtaatctgacactagggggtaatttttctatcgcagcaggtccattagggagaaatctggaggcagacatggcagtgag aagcccagcagctatatatacttactctaagaccaaaggaatatttgctggcatctcaatagagggtagtgctattgtag agaggaaggacgcaaataaaaaattttatgacagagaaatccgggcctatcagatactccagggggaggtagatgctcca gaggaatgtgctgccctctatgaagtgctgcggatgcacagagagaaagccaaggatgctgctttggctctggccaaaaa acaggccgcgaagcatgcagaggccgggacagaaaaactcagggataaatttaatattccacgctttggaagtagtgctt caaaaacagagacacagaaaacaactgttgtgcgtagagaagtcagaaaatctagtgctgaaagtggaccgagagatgct cagtcagacatatgggagtcagccaagtccagcctacccatggctgccgtagctctgtacacataccaagctcaactacc atgtgatctgtccttcaaaaagggagacaagatagagatactgtgtaggacagagaccacccaggattggtgggaggggc gtttccatggtaaacaaggaatcttcccagcaaactacgtaaaggtcacatga |
Protein
Protein ID | pfu_aug2.0_529.1_30865.t1 |
---|---|
Definition | - |
>pfu_aug2.0_529.1_30865.t1 MKAKGLAILTVVRAGFLVTARGGSGIVIAKLADDLIDAEWSAPAAIGMAGLGGGFEIGAEVTDFVIILNSRSAVEAFSKG GNLTLGGNFSIAAGPLGRNLEADMAVRSPAAIYTYSKTKGIFAGISIEGSAIVERKDANKKFYDREIRAYQILQGEVDAP EECAALYEVLRMHREKAKDAALALAKKQAAKHAEAGTEKLRDKFNIPRFGSSASKTETQKTTVVRREVRKSSAESGPRDA QSDIWESAKSSLPMAAVALYTYQAQLPCDLSFKKGDKIEILCRTETTQDWWEGRFHGKQGIFPANYVKVT |