Gene
| Gene Model ID | pfu_aug2.0_529.1_30868 |
|---|---|
| Locus | scaffold529.1 : 130891 ... 133185 : - |
| To GenomeBrowser | scaffold529.1:130891..133185 |
| Genes list of scaffold | scaffold529.1 |
| Synonym | pfu_aug1.0_2596.1_66390 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_529.1_30868.t1 | 1 | 1 | Ribosomal_L11_N | 12 | 69 | 1.2e-15 | 56.6 | 3.6e-19 | 1.8e-15 | 56.1 |
| pfu_aug2.0_529.1_30868.t1 | 1 | 1 | Ribosomal_L11 | 74 | 133 | 2.6e-07 | 30.6 | 8.9e-11 | 4.4e-07 | 29.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_529.1_30868.t1 | gi|260793686|ref|XP_002591842.1| | hypothetical protein BRAFLDRAFT_125332 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_529.1_30868.t1 | gi|524902421|ref|XP_005107462.1| | PREDICTED: 60S ribosomal protein L12-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_529.1_30868.t1 | gi|241998774|ref|XP_002434030.1| | ribosomal protein L12, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_529.1_30868.t1 | gi|242009369|ref|XP_002425460.1| | 60S ribosomal protein L12, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_529.1_30868.t1 | gi|544469289|ref|XP_005570655.1| | PREDICTED: 60S ribosomal protein L12-like [Macaca fascicularis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_529.1_30868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_529.1_30868.t1 atgcctcctaaattcgatcctacagccataactatcgtttacgtgaagtcagtcggaggagaagtgccagctacctcttc attggccccaaagatcggtccacttggtctgtcaccaaagaaagtaggagatgatatctcaaaagccacagtagactgga agggactaaaaataacatgtaaattggtggtacagaatcgtcaggccaaggtagaagttgtaccaagtgcctcatcactg gttattaaggctctaaaggaacctcccagggacagaaagaaggtcaagcatgtgaaacacactggaaacattagcttcga cgagatcctcaacattgcaagacagatgagaccaagaagtatggcaagaaaattagaaggaacagtcaaagaaatattag ttcacagacactgtactatattcaacgcagagcatggagatgttaatggaacatgctggttcagtccagcgacattttag |
|
Protein
| Protein ID | pfu_aug2.0_529.1_30868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_529.1_30868.t1 MPPKFDPTAITIVYVKSVGGEVPATSSLAPKIGPLGLSPKKVGDDISKATVDWKGLKITCKLVVQNRQAKVEVVPSASSL VIKALKEPPRDRKKVKHVKHTGNISFDEILNIARQMRPRSMARKLEGTVKEILVHRHCTIFNAEHGDVNGTCWFSPATF |
|