Gene
| Gene Model ID | pfu_aug2.0_530.1_00842 |
|---|---|
| Locus | scaffold530.1 : 1 ... 11605 : - |
| To GenomeBrowser | scaffold530.1:1..11605 |
| Genes list of scaffold | scaffold530.1 |
| Synonym | pfu_aug1.0_34.1_43431 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_530.1_00842.t1 | 1 | 1 | F-box-like | 19 | 61 | 2.5e-09 | 36.6 | 2.0e-12 | 7.6e-09 | 35.1 |
| pfu_aug2.0_530.1_00842.t1 | 1 | 1 | F-box | 19 | 61 | 9.7e-08 | 31.4 | 6.7e-11 | 2.5e-07 | 30.1 |
| pfu_aug2.0_530.1_00842.t1 | 6 | 1 | WD40 | 135 | 168 | 1.96182e-44 | 147.9 | 4.0e-10 | 1.5e-06 | 27.8 |
| pfu_aug2.0_530.1_00842.t1 | 6 | 2 | WD40 | 175 | 208 | 1.96182e-44 | 147.9 | 9.7e-06 | 0.036 | 13.9 |
| pfu_aug2.0_530.1_00842.t1 | 6 | 3 | WD40 | 213 | 247 | 1.96182e-44 | 147.9 | 7.2e-08 | 0.00027 | 20.7 |
| pfu_aug2.0_530.1_00842.t1 | 6 | 4 | WD40 | 253 | 288 | 1.96182e-44 | 147.9 | 6.4e-07 | 0.0024 | 17.6 |
| pfu_aug2.0_530.1_00842.t1 | 6 | 5 | WD40 | 292 | 327 | 1.96182e-44 | 147.9 | 7.0e-10 | 2.6e-06 | 27.0 |
| pfu_aug2.0_530.1_00842.t1 | 6 | 6 | WD40 | 332 | 368 | 1.96182e-44 | 147.9 | 1.5e-15 | 5.7e-12 | 45.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_530.1_00842.t1 | gi|524868065|ref|XP_005090839.1| | PREDICTED: F-box/WD repeat-containing protein 7-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_530.1_00842.t1 | gi|585642893|ref|XP_006811259.1| | PREDICTED: F-box/WD repeat-containing protein 7-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_530.1_00842.t1 | gi|390340730|ref|XP_001188985.2| | 0.0 | |
| pfu_aug2.0_530.1_00842.t1 | gi|260790197|ref|XP_002590130.1| | hypothetical protein BRAFLDRAFT_83410 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_530.1_00842.t1 | gi|699244425|ref|XP_009859163.1| | PREDICTED: F-box/WD repeat-containing protein 7-like [Ciona intestinalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_530.1_00842.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_530.1_00842.t1 atggaaaaaagaggggctggagacattataaatggtaatgtagatttcacaacatgtctaccaccagagctcatagagag gattctctttttactgacggcacaagaacttagtcggttttctcaagtatgcatcagctggagagaggcttcaaacaggg atcaactctggatgcaccactgcatggtcaggggatggatgcggtttggagtacagggagagattctgcatgaacagcca acgataaatcctgaaacaaatgtatcagggacatcacctgtcttccaactaccaagatatatttcaccagataccagact gttacctatatgtaaatggaaacatgtctttattaggattcatcatctatttaaaaactgggagaaaggtcgctacaccc agccagccatactcaaaggtcacaggaaaaaagtcacagcaatggattgtaataggtcatgtatagtgactggtagtgag gataaatctctgattatttgggatctttactcatgtcgtaaactctacagtattaactgccattctgactgtatcaatgt catcaaaatagtgaacaacaccatttacaccggctgtgatgacagcgctatcagagtaatcgactctacaacaggtcagc tgttatactcgttactagggcatgctggcaatgtagagcatatacttttgtatgatgaccttctcgttagtgctgctaca gatagaacactcagagtttggtgtctgaaagaaagaaaattgaaatattccttcaaagaccatgatgatgagattgagtg tcttaaaaactatggaaaccttgtggtatcaggaggctgggatacaaggttacacctgtatgatataacacggggaaaac tactgcaaaaactggagggacacactgaagttgtgagttgctgctactgtggtgaccagacggttgtgagtggtagcggt gactgtgacctcagaatttggcagatctcctccggagaatgtctccacatacttaaaggccatacaggagaagtgtactg ccttgcatgtaatgaggagatgatagcctctgggtcacaggacagcacagttagactgtggagtcatcaag |
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Protein
| Protein ID | pfu_aug2.0_530.1_00842.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_530.1_00842.t1 MEKRGAGDIINGNVDFTTCLPPELIERILFLLTAQELSRFSQVCISWREASNRDQLWMHHCMVRGWMRFGVQGEILHEQP TINPETNVSGTSPVFQLPRYISPDTRLLPICKWKHVFIRIHHLFKNWEKGRYTQPAILKGHRKKVTAMDCNRSCIVTGSE DKSLIIWDLYSCRKLYSINCHSDCINVIKIVNNTIYTGCDDSAIRVIDSTTGQLLYSLLGHAGNVEHILLYDDLLVSAAT DRTLRVWCLKERKLKYSFKDHDDEIECLKNYGNLVVSGGWDTRLHLYDITRGKLLQKLEGHTEVVSCCYCGDQTVVSGSG DCDLRIWQISSGECLHILKGHTGEVYCLACNEEMIASGSQDSTVRLWSHQ |
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