Gene
| Gene Model ID | pfu_aug2.0_530.1_00846 |
|---|---|
| Locus | scaffold530.1 : 94568 ... 109895 : - |
| To GenomeBrowser | scaffold530.1:94568..109895 |
| Genes list of scaffold | scaffold530.1 |
| Synonym | pfu_aug1.0_100023.1_56930 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| selenoprotein w | GO:0005737 GO:0005886 GO:0010269 GO:0016491 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_530.1_00846.t1 | 1 | 1 | Rdx | 15 | 75 | 1.1e-07 | 31.8 | 2.6e-11 | 1.3e-07 | 31.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_530.1_00846.t1 | gi|586523549|ref|XP_006905203.1| | PREDICTED: selenoprotein W, partial [Pteropus alecto] | 1.0e-21 |
| pfu_aug2.0_530.1_00846.t1 | gi|759172737|ref|XP_011376488.1| | PREDICTED: selenoprotein W, partial [Pteropus vampyrus] | 9.0e-21 |
| pfu_aug2.0_530.1_00846.t1 | gi|507981581|ref|XP_004694301.1| | 3.0e-19 | |
| pfu_aug2.0_530.1_00846.t1 | gi|634853770|ref|XP_007941057.1| | PREDICTED: LOW QUALITY PROTEIN: selenoprotein W [Orycteropus afer afer] | 3.0e-19 |
| pfu_aug2.0_530.1_00846.t1 | gi|379056386|ref|NP_001243809.1| | selenoprotein W [Cricetulus griseus] | 5.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_530.1_00846.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_530.1_00846.t1 atggtccctacgactcccctacggatagctacgactccactacagttcgaaagattaaagaatgatcttgtagaagaatt tggaaacaatcttaacatcgaaggcacgggcacccctaatgtgactggcttttttgaggttgaggttgaagggaaaatga tacattccaaaaagaatggagatggatatgtagacagtgaaaagaaattgcagaagatcaaagatgcaattcgggcagct ttgtag |
|
Protein
| Protein ID | pfu_aug2.0_530.1_00846.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_530.1_00846.t1 MVPTTPLRIATTPLQFERLKNDLVEEFGNNLNIEGTGTPNVTGFFEVEVEGKMIHSKKNGDGYVDSEKKLQKIKDAIRAA L |
|