Gene
| Gene Model ID | pfu_aug2.0_5316.1_22662 |
|---|---|
| Locus | scaffold5316.1 : 5156 ... 6925 : - |
| To GenomeBrowser | scaffold5316.1:5156..6925 |
| Genes list of scaffold | scaffold5316.1 |
| Synonym | pfu_aug1.0_11033.1_03011 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5316.1_22662.t1 | 1 | 1 | C1q | 58 | 180 | 5.7e-27 | 94.2 | 1.2e-30 | 8.9e-27 | 93.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5316.1_22662.t1 | gi|573882323|ref|XP_006629344.1| | PREDICTED: complement C1q-like protein 4-like [Lepisosteus oculatus] | 2.0e-16 |
| pfu_aug2.0_5316.1_22662.t1 | gi|326679178|ref|XP_687710.2| | PREDICTED: complement C1q-like protein 4 [Danio rerio] | 2.0e-16 |
| pfu_aug2.0_5316.1_22662.t1 | gi|657764894|ref|XP_008317087.1| | PREDICTED: complement C1q-like protein 4 [Cynoglossus semilaevis] | 2.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_5316.1_22662.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5316.1_22662.t1 atggctcgatcagggtccattttccaattatgcatggtgatagttctgtcagtatttgtttacacatcagcgacatacca aaaacaaactaaacttgagcttttgaaggaaattgtcgggagattcttcggtgacgtcgaaggagtttgcgagcgacctc tgcctaagattgcatttgcagttgtactctccaaagtcctttcaaatgtgaatgcaatggtgttaaaatttgattccatt ttgaccaatgagggcaatggatacaataaaaacactggggtattcacagctccttcagccgggatgtatctgttttcatg gcatattttgtctcattcgggaaagaaagctcgtgtttatctctataaaaacaacaatcaaacctgggttagctatgcag atgacggcccacaaggatatgataccggaagtgctacagtcatcctacgcctcaagaagggtgataaagtagatctacgc acagtggaaagtggcaactaccttcatagtggcttctctacctttactggaaccttgttataccgttag |
|
Protein
| Protein ID | pfu_aug2.0_5316.1_22662.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5316.1_22662.t1 MARSGSIFQLCMVIVLSVFVYTSATYQKQTKLELLKEIVGRFFGDVEGVCERPLPKIAFAVVLSKVLSNVNAMVLKFDSI LTNEGNGYNKNTGVFTAPSAGMYLFSWHILSHSGKKARVYLYKNNNQTWVSYADDGPQGYDTGSATVILRLKKGDKVDLR TVESGNYLHSGFSTFTGTLLYR |
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