Gene
| Gene Model ID | pfu_aug2.0_5317.1_26059 |
|---|---|
| Locus | scaffold5317.1 : 12628 ... 29355 : - |
| To GenomeBrowser | scaffold5317.1:12628..29355 |
| Genes list of scaffold | scaffold5317.1 |
| Synonym | pfu_aug1.0_10.1_21910 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5317.1_26059.t1 | 1 | 1 | RVT_1 | 335 | 495 | 5.2e-24 | 84.7 | 6.5e-27 | 1.4e-23 | 83.4 |
Transcript
| Transcript ID | pfu_aug2.0_5317.1_26059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5317.1_26059.t1 atgtaccataggatccctatagataagagaccagtattgcaacccacaagtaaattaacaggtgcgagcggagtaccttt gagagagagtggtaaggccgtcttcaatattgaactaggcgatgttcaatttacacatgagatagtagtagctgacatat cggacgagggacttttgggaatggacattttacagaatggtccatatggtccggccgatatattgttgacacaaggagta ctcaaatggaagggtacagatattccaggaatccaggtaggacttcctgagagagctttgaacattagggccaatagtga ttaccatatacctccacagtgtgaaatgatgatagacgtgacggttgatgctgatgataatgctctgacggataatgaga tgctatttgaaccatcgtcgacatttttagagagaaagcaattactagttgcaaatgaactattagatgttagtaatcca tccagtctcaaagtgcgaatgctgaacccgttctcagaagcagtgaccattagaaaagatgaaacagtagggaatacaga atatgtcgaaataatagggtgtttatctgagacagagagaagggatgacacagagagattttcaaatgtcaggcaaatac agacaaatggccaaaaagataatgcgagtgatgtctcttcgagctacaatgatgaagttatacccccacatttagaaaat ctatatcaagaggcaatacatggaaagtcggaaatggaaagaaacatgataaagaatttgtttattaagtaccaatgcac tttttcaaaggatgatgaagatttaggaaaaactacaatagtacaacacgcaatagatacaggagaagcaaagccaatca agcagaggcccaggagagtaccaatagccctggcaggtgaagagggagatgctatacagaagcttaagcaacaaggagtc atacaagagtcaagttctccatggtcatcacctatcgtattagtcaaaaagaaaaacggtaaaatcaggccttgtgtgga ctatagaaaactcaatgaggtaaccaccaaagatgcgtttccactccctaggatacaagactgtttagatgcaatgaatg gagcaaaagtgttttctactttcgatttgacatgtggataccaccagatacctgtaaaacctgaggatgttccaaagaca gcttttgtaaccaaatatggattatacgagttcacttctatgccatttggattgtgcaactcagcggcgaccttccaacg agtcatggaaattgcactcaacggactacaatggcttacctgtttaatctacatagatgacattatagtctttggtacca atgtacagcagaatcttgagagagttgatcaagtattgaataggatcacagaagcaggattggagttaaaacctgaaaaa tgcgaactacttaagtcagaagtctcgtttctaggacacaaaattaatgaagaaggaatcaaacctgagcctgacaacat agccaaaattctgtcttgcccaaccccaaaaactgtgactgatgtccgacaattcctcggaatgggaagttactataggc gttttgtaaacaacttctctcaaatagtagcaccaatggtaaatttaacaaagaaacacgtaccatttcattgggacgag acctgtgaaaatgccttccagagcctgaaacaagcactaactagtccaagcattatggcctaccctaaagacgaaggaga ctttatactagattgcgatgctagtcatgaagcgattggtgcagtattaagtcagaagcaagatgatgtagagcgcatta tagcatacggcagtagaactctcaacaaggcagagaagaattattgcattacggataaagaacttttggccattcgatat ttcattgaatactacaggcagtatcttctaggcagacaatttaaagtgagaaccgaccaccaagcacttgtttggttgtt taaattaaaggaaccaaaaggacgaattgccagatggattgagatcctatccccatataatttcaccattgaatatcaac ctggacagaagcaccaaaatgcagatgcgatgtcaagaatctgcaatcctagagactgttcatgtggagatgttgacaca ttggaacccctgaagtgtggaccatgtcataagtgtgtaaggaaaacagagatgatgtgcggtacaataatgttgaacca agagaaagacacaggccaaaacgaaagtgagagtaaagtgaataaggtagcaactagatcagaagccatgacagaaccac tatcaagctttggcgtctacactactgcagaacttgagaaattccaaaagggcgatgaaaacttaaagcgagttatggaa tggtgtcatcaaggcaaaagaccagagtacaaggacatcatagcattaagtccagaactacaacattattggcagctttg gccctccacacatttgataaagggtgttctctataagaatttctacaagaaagatggaaccgcccactacatacagttaa tggtacccaaaaggttgagaagtgaagtcctgagacaaatgcatgacagtttatatagcggtcatctaggacaaaagaaa acaaaactcagaacacaacaaagattttactggtatgaaatgcgtgaggatgccaatgtatgggtagcgagttgtgatgt ctgtggaaggaacaaaccagaaaatagaaagcctaaagcagccttaggtgacatgagagtaggtgcaccaatggatagga tagccatggatttgattggtccattaccccgaccagagagggaaaccgtttcattttggttactttttgacataaagaaa accagaaccagcccgagaaatccaaaaggaaatggtcttgtagagagatacaacaaaacacttgtaaagatgatcaagtc cttcatccagaatgatcaagaagaatgggaccaacatttatctatcttgaccgcagcctaccgtgctacgcctcatgaaa gcagcacaatgactccaaacttacttatgctgggaagggagacgaggcaaccagttgacctgatatttggtacaccagaa gtcaataatggtcagagtgaaggtgaatatgtgaacaaattaaggcagagaatacaacatgcacatgaaatagctcgtaa gcatctcaatgaagccttccatcatcaaaaggaccactatgacgtaaagagtagagaaaatgtatatgaagaaggagaca ctgtatgggtgttaaatgaatcgagaaaacctggagttacaacaaagttgcagccgaattacattggaccatgtgtagtg cttgaaaaaattaataatctgctgtacagaattcaactcgacaacaccggaagtcagaaagtactgaaccatgacaagct aaagaagtatcaaggaaaaaatccacctacctggaggaagaaggcagtgattaaatttaggaagacaaaccatgaattaa atattgttacatttgccatattcaccatgaatacgcttctgtctgcggcaactaaagccaagattgccaagagagggctc gcctacgagtgcgtgaagtgtggtcccaccttcagaggagagaagagatatgtgcgggcgcatgtctacaaataccatgt accgctggacaaggtaccattctactgcaggctgtgccactacatgtcggattcagagaaagagatcataaaacatgtca agggatataaaccacaccggcaggccgaggaacaacttagggccgagggcaggacccctgatgaaaactacacccacaag aaccctgcaccagtagagctgggagaggcccacatgaggaaattatccccggaggacagtcagttggtctggctggccag gatcaaggaggcaggcactcaacaagtcccagacttgaccgaggagcaggactcaggcagcatatgcatggagagttgcc agagacggcagaggaggaggaagaggacctgctggcaggaattctccgagacgaatgcagccaagcagctgaggaattcc ctgaggaggaggcccaggtggcggcaggagctggtatcctgtcagatcctccactgtatgcaggacatacagaaggaagc tgttcaaaccaacaggctgctgaccgtgttgaacactggtatacgaaaaaatacaatgatgatggacgagctggcctcaa gtattagaacgcaggattgtaggataagagaagaacgtaacagggcatcgccatactggaggccaagatcagtggttacc ataccaaagaggagaaacgagacacgaagatcagacagaagtgggaaaagcgccattgttggcctgggcggaaaaaagaa aacatcagatgtgaataccaaacacagacaatcaaaagacagagtaaatgagaccaaagaagaaatagaagagattctca ccaagctacagagtacacatgagctttttgatgaaaagatatcaaagatggagtggaaaataaatacactaaaagaaaag agtgagagagttgaagagctaaagcttagagaatcaaagatgaaagagttgcagtcaactaaacaagatttaggaggctt tgaaaagagaattggagacctgaaggaaaaaatacggaacaaaatgatgctttgtaagaacttggaaattacagtttctg cagtagattaccaacaaaattacaaagcccagaaagccaagaaaagaaaagctgaattagatagcctcagaagtatcaaa gaaaagcttgagcagatgagtggtcttagttttcttccatcatctccttcctcgattaaagtacagctgaatggatcagg caaatccattgatgatctgaagctaaccctgaccatggagtttggggtgataccatttggacttcatctgacagcagctc aggtcaacgtaaacagcttatacatagatgacatcctggagatagccatcaaaacaaatgatgtaccgatgtttataaca gccgtcagacaaagatggcaaacacattatcctctagctcaagaaatgcttcatatagctaaaaaccatgctgtagattg gatcagagaggagggtattgtcagagtgttactgggtgccacaggatcggcaatctgtacattatcactgccgtcaacat atccagcctcaggtgatatcagcctgctcaggataggtggcattgatattaacatacaggatgtggtgcctcctccaagc accaaaagtttaacagactgggtactgtttcttgaagacaaatttggaaatatttaa |
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Protein
| Protein ID | pfu_aug2.0_5317.1_26059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5317.1_26059.t1 MYHRIPIDKRPVLQPTSKLTGASGVPLRESGKAVFNIELGDVQFTHEIVVADISDEGLLGMDILQNGPYGPADILLTQGV LKWKGTDIPGIQVGLPERALNIRANSDYHIPPQCEMMIDVTVDADDNALTDNEMLFEPSSTFLERKQLLVANELLDVSNP SSLKVRMLNPFSEAVTIRKDETVGNTEYVEIIGCLSETERRDDTERFSNVRQIQTNGQKDNASDVSSSYNDEVIPPHLEN LYQEAIHGKSEMERNMIKNLFIKYQCTFSKDDEDLGKTTIVQHAIDTGEAKPIKQRPRRVPIALAGEEGDAIQKLKQQGV IQESSSPWSSPIVLVKKKNGKIRPCVDYRKLNEVTTKDAFPLPRIQDCLDAMNGAKVFSTFDLTCGYHQIPVKPEDVPKT AFVTKYGLYEFTSMPFGLCNSAATFQRVMEIALNGLQWLTCLIYIDDIIVFGTNVQQNLERVDQVLNRITEAGLELKPEK CELLKSEVSFLGHKINEEGIKPEPDNIAKILSCPTPKTVTDVRQFLGMGSYYRRFVNNFSQIVAPMVNLTKKHVPFHWDE TCENAFQSLKQALTSPSIMAYPKDEGDFILDCDASHEAIGAVLSQKQDDVERIIAYGSRTLNKAEKNYCITDKELLAIRY FIEYYRQYLLGRQFKVRTDHQALVWLFKLKEPKGRIARWIEILSPYNFTIEYQPGQKHQNADAMSRICNPRDCSCGDVDT LEPLKCGPCHKCVRKTEMMCGTIMLNQEKDTGQNESESKVNKVATRSEAMTEPLSSFGVYTTAELEKFQKGDENLKRVME WCHQGKRPEYKDIIALSPELQHYWQLWPSTHLIKGVLYKNFYKKDGTAHYIQLMVPKRLRSEVLRQMHDSLYSGHLGQKK TKLRTQQRFYWYEMREDANVWVASCDVCGRNKPENRKPKAALGDMRVGAPMDRIAMDLIGPLPRPERETVSFWLLFDIKK TRTSPRNPKGNGLVERYNKTLVKMIKSFIQNDQEEWDQHLSILTAAYRATPHESSTMTPNLLMLGRETRQPVDLIFGTPE VNNGQSEGEYVNKLRQRIQHAHEIARKHLNEAFHHQKDHYDVKSRENVYEEGDTVWVLNESRKPGVTTKLQPNYIGPCVV LEKINNLLYRIQLDNTGSQKVLNHDKLKKYQGKNPPTWRKKAVIKFRKTNHELNIVTFAIFTMNTLLSAATKAKIAKRGL AYECVKCGPTFRGEKRYVRAHVYKYHVPLDKVPFYCRLCHYMSDSEKEIIKHVKGYKPHRQAEEQLRAEGRTPDENYTHK NPAPVELGEAHMRKLSPEDSQLVWLARIKEAGTQQVPDLTEEQDSGSICMESCQRRQRRRKRTCWQEFSETNAAKQLRNS LRRRPRWRQELVSCQILHCMQDIQKEAVQTNRLLTVLNTGIRKNTMMMDELASSIRTQDCRIREERNRASPYWRPRSVVT IPKRRNETRRSDRSGKSAIVGLGGKKKTSDVNTKHRQSKDRVNETKEEIEEILTKLQSTHELFDEKISKMEWKINTLKEK SERVEELKLRESKMKELQSTKQDLGGFEKRIGDLKEKIRNKMMLCKNLEITVSAVDYQQNYKAQKAKKRKAELDSLRSIK EKLEQMSGLSFLPSSPSSIKVQLNGSGKSIDDLKLTLTMEFGVIPFGLHLTAAQVNVNSLYIDDILEIAIKTNDVPMFIT AVRQRWQTHYPLAQEMLHIAKNHAVDWIREEGIVRVLLGATGSAICTLSLPSTYPASGDISLLRIGGIDINIQDVVPPPS TKSLTDWVLFLEDKFGNI |
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