Gene
| Gene Model ID | pfu_aug2.0_538.1_27513 |
|---|---|
| Locus | scaffold538.1 : 22506 ... 45564 : + |
| To GenomeBrowser | scaffold538.1:22506..45564 |
| Genes list of scaffold | scaffold538.1 |
| Synonym | pfu_aug1.0_87401.1_71295 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_538.1_27513.t1 | 1 | 1 | Ig_2 | 107 | 192 | 1.3e-12 | 47.6 | 2.3e-15 | 3.8e-12 | 46.1 |
| pfu_aug2.0_538.1_27513.t1 | 2 | 1 | Ig_3 | 107 | 180 | 1.1e-09 | 38.6 | 6.9e-13 | 1.1e-09 | 38.6 |
| pfu_aug2.0_538.1_27513.t1 | 1 | 1 | I-set | 110 | 193 | 8.6e-16 | 57.5 | 1.2e-18 | 1.9e-15 | 56.4 |
| pfu_aug2.0_538.1_27513.t1 | 1 | 1 | V-set | 110 | 180 | 9.6e-07 | 28.6 | 1.5e-08 | 2.5e-05 | 24.1 |
| pfu_aug2.0_538.1_27513.t1 | 3 | 1 | ig | 121 | 177 | 2.0e-09 | 37.4 | 4.7e-12 | 7.8e-09 | 35.5 |
| pfu_aug2.0_538.1_27513.t1 | 3 | 1 | TSP_1 | 201 | 249 | 3.6e-25 | 87.8 | 2.1e-12 | 3.4e-09 | 36.6 |
| pfu_aug2.0_538.1_27513.t1 | 3 | 2 | TSP_1 | 258 | 307 | 3.6e-25 | 87.8 | 8.1e-11 | 1.3e-07 | 31.5 |
| pfu_aug2.0_538.1_27513.t1 | 2 | 2 | Ig_3 | 302 | 326 | 1.1e-09 | 38.6 | 9.0 | 15000.0 | -4.8 |
| pfu_aug2.0_538.1_27513.t1 | 3 | 3 | TSP_1 | 315 | 364 | 3.6e-25 | 87.8 | 8.1e-11 | 1.3e-07 | 31.5 |
| pfu_aug2.0_538.1_27513.t1 | 3 | 2 | ig | 565 | 600 | 2.0e-09 | 37.4 | 2.8 | 4600.0 | -2.2 |
| pfu_aug2.0_538.1_27513.t1 | 3 | 3 | ig | 634 | 658 | 2.0e-09 | 37.4 | 5.9 | 9800.0 | -3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_538.1_27513.t1 | gi|759132770|ref|XP_011362872.1| | PREDICTED: hemicentin-1 [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_538.1_27513.t1 | gi|560952645|ref|XP_006198848.1| | PREDICTED: hemicentin-1 [Vicugna pacos] | 0.0 |
| pfu_aug2.0_538.1_27513.t1 | gi|471364860|ref|XP_004372974.1| | PREDICTED: hemicentin-1 [Trichechus manatus latirostris] | 0.0 |
| pfu_aug2.0_538.1_27513.t1 | gi|554548062|ref|XP_005868571.1| | PREDICTED: hemicentin-1, partial [Myotis brandtii] | 0.0 |
| pfu_aug2.0_538.1_27513.t1 | gi|511980693|ref|XP_004808200.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_538.1_27513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27513.t1 atgatgctttactttctggtggttgttcttcataacattgctgatgcaaaagccggagttgaaataagtacaagcgcaac atacagctacgttatgttgaatccatatggtatcaacgctctgtcacgaactgatattgtgtttgctgtaaaggcatgtg gacatgcgcatactgccctcatgtcagatcccacagacacaactggcacacaatacgaggttggcataggagggtgggac aatcaacggtcgttcatcagatccgaaaaacaaggtcaaaattgggcagaggaattccactcaccattagattaagatcc agtaatatctgcaccatcaccagtaactgggaacgaagataaccaagtcatactaacatgcaccacctctggataccctg cacccaccgttgtatggactaaaggtggtgtcactttaccaggtggagacttggacatttcagttgattcagataactca ctgataatagacaacgcccatcaatcggataatggcgtatacacgtgtggagcaactaatattatgtcatctgtatcaaa tgatatagcacttaatatttcacctatcaatggtggttggtctcaatggagtgtttggtcttcctgttcagtttcatgtg gtacagggaccaaaacacaatctcgggcgtgtgattcaccaataccatcttctagtgggtcaaactgtgttggaagcgta tcggaaatcaactcttgtatagagatatgtgatgtgaacggttcttggaccacatggtccacatgggcagtatgtagtgt aacatgtggtggaggagtttcccatagaagtagaacctgcaccaaccctgcaccttctggtaatggacttgcctgcattg gtgaggattcagaagatatccaatgttcaacaaacaattgtccagtgaacggttcttggaccacatggtccacatgggca gtatgtagtgtaacatgtggtggaggagtttcccatagaagtagaacctgtaccaaccctgcaccttctggtaatggact tgcctgcattggtgaggattcagaagatatccaatgttcaacaaacaattgtccaggtcttcaaacatactgcgagacaa cttattccagaaatggaatcaatcagatgtggatcctagaaaattctaaggaacttttggaaactttaaaagccaccaat ttcaatcatataacctacataaagtctttcgacttctccactctctacactaccatcccacaccaaaaactcaaactcag acttgccaatattattcgcaacacctttctttcaaaaaatggcaataggagatacaaatacctcgtcatagggcgtgagg atacttacttcatgaaggaacactctgattccaacacaaagtatacggaagacgatatcatccggatgctgggtttttat gtggtgtttggaggaactgtattccagcagatagtcggaatccccatgggtaccaattgcgctccactgcttgcggactt atttttatattcatgcgaagctgacttcatccaggccttgctctcgactggacgaaagcacatcgcatctcagtacgatt ttaccttcagatacatagatgacgtgttatccattaattatccgacattaaaggaccatctacatgaaatctatcctcat gaactagagatcaaggaaacaacagagagcaacagatccgcttcgtacttggatacatttttgaacacctcactgtatga caagcgtgacgatttcagcttccacattactaacttccctttcataaagaagggagggaatctccaacaagaccctgttg cagcatcaacagcaaaacaccaatacacccgaggcaaaaacacaaaagacgagcatagtatgagaagaaaaagagacata cgacatgtaaacatcaaacacaaaagattacacgtaaaccgacgagaccaatgggcaaccggtgccgactttggacggcc atttgccacacgagaagcaaatagtgtggttatcctggattacgtgcgcattccctttcacttctccaattacccaaagg tctcgaagaacgtacaattgtga |
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Protein
| Protein ID | pfu_aug2.0_538.1_27513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27513.t1 MMLYFLVVVLHNIADAKAGVEISTSATYSYVMLNPYGINALSRTDIVFAVKACGHAHTALMSDPTDTTGTQYEVGIGGWD NQRSFIRSEKQGQNWAEEFHSPLDXDPVISAPSPVTGNEDNQVILTCTTSGYPAPTVVWTKGGVTLPGGDLDISVDSDNS LIIDNAHQSDNGVYTCGATNIMSSVSNDIALNISPINGGWSQWSVWSSCSVSCGTGTKTQSRACDSPIPSSSGSNCVGSV SEINSCIEICDVNGSWTTWSTWAVCSVTCGGGVSHRSRTCTNPAPSGNGLACIGEDSEDIQCSTNNCPVNGSWTTWSTWA VCSVTCGGGVSHRSRTCTNPAPSGNGLACIGEDSEDIQCSTNNCPGLQTYCETTYSRNGINQMWILENSKELLETLKATN FNHITYIKSFDFSTLYTTIPHQKLKLRLANIIRNTFLSKNGNRRYKYLVIGREDTYFMKEHSDSNTKYTEDDIIRMLGFY VVFGGTVFQQIVGIPMGTNCAPLLADLFLYSCEADFIQALLSTGRKHIASQYDFTFRYIDDVLSINYPTLKDHLHEIYPH ELEIKETTESNRSASYLDTFLNTSLYDKRDDFSFHITNFPFIKKGGNLQQDPVAASTAKHQYTRGKNTKDEHSMRRKRDI RHVNIKHKRLHVNRRDQWATGADFGRPFATREANSVVILDYVRIPFHFSNYPKVSKNVQL |
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