Gene
| Gene Model ID | pfu_aug2.0_538.1_27518 |
|---|---|
| Locus | scaffold538.1 : 172915 ... 211602 : + |
| To GenomeBrowser | scaffold538.1:172915..211602 |
| Genes list of scaffold | scaffold538.1 |
| Synonym | pfu_aug1.0_3892.1_59368 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_538.1_27518.t1 | 4 | 1 | HMG_box | 46 | 63 | 6.4e-09 | 35.9 | 2.0 | 15000.0 | -4.4 |
| pfu_aug2.0_538.1_27518.t1 | 4 | 2 | HMG_box | 212 | 267 | 6.4e-09 | 35.9 | 0.00051 | 3.8 | 7.8 |
| pfu_aug2.0_538.1_27518.t1 | 4 | 3 | HMG_box | 290 | 350 | 6.4e-09 | 35.9 | 8.6e-13 | 6.4e-09 | 35.9 |
| pfu_aug2.0_538.1_27518.t1 | 4 | 4 | HMG_box | 543 | 560 | 6.4e-09 | 35.9 | 0.41 | 3000.0 | -1.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_538.1_27518.t1 | gi|585690305|ref|XP_006821039.1| | PREDICTED: nucleolar transcription factor 1-like isoform X2 [Saccoglossus kowalevskii] | 2.0e-17 |
| pfu_aug2.0_538.1_27518.t1 | gi|165971082|gb|AAI58235.1| | ubtf protein [Xenopus (Silurana) tropicalis] | 4.0e-17 |
| pfu_aug2.0_538.1_27518.t1 | gi|573893268|ref|XP_006634387.1| | PREDICTED: nucleolar transcription factor 1-B-like [Lepisosteus oculatus] | 6.0e-17 |
| pfu_aug2.0_538.1_27518.t1 | gi|512873219|ref|XP_002935582.2| | PREDICTED: nucleolar transcription factor 1 isoform X1 [Xenopus (Silurana) tropicalis] | 7.0e-17 |
| pfu_aug2.0_538.1_27518.t1 | gi|617503398|ref|XP_007541249.1| | PREDICTED: nucleolar transcription factor 1-A-like isoform X4 [Poecilia formosa] | 8.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_538.1_27518.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27518.t1 atgggcaaagctaagcgcaaaattgatatggacacagaattgtcccaaaatgacggtgcatctgttaagaaaaagaagaa gaagcactcagaatcaggaattgttccagacagtctaaccaacagtcatacctcagaacatgcagagaaaaagaagaaaa agaagaagaaaagaaacaaagaaaagtcaaaggacaaagtcttcacagaacacccggtgacggaggatacaagtcatatg gcgccctctggtgacagtaatagggagtctcaggatgaaggaaaatcaagtgaatcggaaccctggaaaatagaggacac ccttagactagtccattacttcctgaccttacccgctgtatctgataatgggctttcccactccactcttcagaaagaca tagactggaatgctgtacacatagaaggcatgagcactgaggattgtaaacagaaattcaaattcttatcttatagggca aagcaaatgatgactataggagagttatgccccttgataaacagagttcttgaggaacctgttgttcagagacatcacgg aataaaggttcccacaaaagcggcaaaaaaggagcctgtattaaaggtgaaaaccctgacaccccagcaaatgtatacag attccatggtagccaaagaagtgcaagaaaattcccagcttgatgttaaagagataaaggcaaaaaaagagttcttcaga aagaaatggtacacactgaaagacagcaagaaggtgaaatggattcagaaagcaattcaggatcaagaggatgcatcgaa aaagattttggtgacaaaggcagagaagaaactttctgaaaaggcctctggggcaccagttgcacccccaggaagtgcgt atagtttattctgcaagatgctgatgcctgaactcacagagtacaaaggaacagaaaaattcacaatatgtggacagaga tggaaagccctgagtgatgaggagaaaaagcagtaccatacggagcactcaaaacttcaggaagagtataaacggaaata tcaagaatatcttagcacattaacagaagaacaaaggcaagctctccctgtaaagaataaacccaagccaaaagccagtg tatccaaaactcccaaggtgccctccaaatcaccttcaccgaagaaagcatccaaaaagaagatgaacgattttatcgat ctagagtcgcaagacgagttccaatctcctttagctcagaaagataatgtcaagaagaaaatggcaacacctcaaataaa agagaaagtaacgtcaccaaggaagtcttcttcagcagttaaatccaaaaaggactcagattctagcagctctgaggaat caagtgaagatgagacagttgttaaggtgccctccaaatcaccttcaccgaagaaagcatccaaaaagaagatgaacgat tttatcgatctagagtcgcaagacgagttccaatctcctttagctcagaaagataatgtcaagaagaaaatgacaacacc acaaataaaagagaaagtaacgtcaccaaggaagtcttcttcagcagttaaatccaaaaaggactcagattctagcagct ctgaggaatcaagtgaagatgaggcagtcgttaagaaagataatcaaaaatataaaacagcaacacctaaaatgaaagag aaagtaacgtcaccaaggaagtcctcttcagcaattaaatccaagaaggactcagattctagcagctccgaggaatcgag cgaagatgagacagtaattaagaagaactcacctaagaaagccccatcaggaagcactagtaaacagcgccccaagccag actcatctagctctgactcgagtgactcagattaa |
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Protein
| Protein ID | pfu_aug2.0_538.1_27518.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27518.t1 MGKAKRKIDMDTELSQNDGASVKKKKKKHSESGIVPDSLTNSHTSEHAEKKKKKKKKRNKEKSKDKVFTEHPVTEDTSHM APSGDSNRESQDEGKSSESEPWKIEDTLRLVHYFLTLPAVSDNGLSHSTLQKDIDWNAVHIEGMSTEDCKQKFKFLSYRA KQMMTIGELCPLINRVLEEPVVQRHHGIKVPTKAAKKEPVLKVKTLTPQQMYTDSMVAKEVQENSQLDVKEIKAKKEFFR KKWYTLKDSKKVKWIQKAIQDQEDASKKILVTKAEKKLSEKASGAPVAPPGSAYSLFCKMLMPELTEYKGTEKFTICGQR WKALSDEEKKQYHTEHSKLQEEYKRKYQEYLSTLTEEQRQALPVKNKPKPKASVSKTPKVPSKSPSPKKASKKKMNDFID LESQDEFQSPLAQKDNVKKKMATPQIKEKVTSPRKSSSAVKSKKDSDSSSSEESSEDETVVKVPSKSPSPKKASKKKMND FIDLESQDEFQSPLAQKDNVKKKMTTPQIKEKVTSPRKSSSAVKSKKDSDSSSSEESSEDEAVVKKDNQKYKTATPKMKE KVTSPRKSSSAIKSKKDSDSSSSEESSEDETVIKKNSPKKAPSGSTSKQRPKPDSSSSDSSDSD |
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