Gene
| Gene Model ID | pfu_aug2.0_538.1_27519 |
|---|---|
| Locus | scaffold538.1 : 222775 ... 259395 : + |
| To GenomeBrowser | scaffold538.1:222775..259395 |
| Genes list of scaffold | scaffold538.1 |
| Synonym | pfu_aug1.0_3727.1_08706 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_538.1_27519.t1 | 2 | 1 | Lectin_C | 97 | 175 | 1.4e-10 | 41.6 | 4.4e-14 | 2.2e-10 | 41.1 |
| pfu_aug2.0_538.1_27519.t1 | 1 | 1 | TIMP | 190 | 346 | 1.1e-06 | 28.3 | 4.0e-10 | 2.0e-06 | 27.5 |
| pfu_aug2.0_538.1_27519.t1 | 2 | 2 | Lectin_C | 264 | 335 | 1.4e-10 | 41.6 | 0.21 | 1000.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_538.1_27519.t1 | gi|736309003|ref|XP_010795439.1| | PREDICTED: CD209 antigen-like protein C [Notothenia coriiceps] | 4.0e-15 |
| pfu_aug2.0_538.1_27519.t1 | gi|498973750|ref|XP_004548213.1| | 8.0e-15 | |
| pfu_aug2.0_538.1_27519.t1 | gi|543278853|ref|XP_005427463.1| | PREDICTED: C-type lectin domain family 4 member A [Geospiza fortis] | 8.0e-15 |
| pfu_aug2.0_538.1_27519.t1 | gi|543278927|ref|XP_005427489.1| | PREDICTED: C-type lectin domain family 4 member E-like [Geospiza fortis] | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_538.1_27519.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27519.t1 atgatagcactccgacgtcaaactcaagcttcgtcaccattgcattgccatttaccggaagtcgagcatatttctctggg ccttttcgctgctttcttgcttttggagttgacagcaggacagacaatctacggaatgtcgtgcaatgaagaacttctca gacaattctcatcactggagaagagagtaaaaatattagagaaaaaaacgagaacatctccccaaggtcctgattgccct gaaggatggagtcactttcagagttcatgctacaaagcttctatttctatgatgaactggactgcagcacacaaaacctg tattgatcaaggcgctaagctggtagagattgagactataaaggaggaccagtttctgaagaagctcgtgaacgatagtg acaccagactcgactattggactggtggcgtatataacgaggtccttggcaaatggatgtggatagacagtaacaagagt ctaacctacacaaactggagacctggtgaacctaacagattgaatgatgagaacggtgtggaggatcgtatggaaattca tctgtttaaaggtaaagttacttcagaacaagtcatcttgggaaaaaggggaatgtctgaatttgtacgcagcagaatat acggactagaacttcttgatgtctaccgaaatgagactggagaagacctgagagaaggggatgaaatagaagttagaacc gcgggaagtggagcgacctgtggaatcacactaacggaaggagaagagtactatctatcagcttacagatggaaaaatac cttctatgttggactttgtggaatgcacactactagtcttacacaactggaaatggacggtatagtcaacgggaggttcg attgtaactgtaagataaacaatggatggcctagaatccctagaggtgaggagaacctgacttgtgccctggcaatgctc cgaggagggtatgattaccgatgtcttatgaactacgctgtctgtagattcaacgagcagagtaagagatgcagttggga agctgatgaaagtcaagaggcttgtcagcgtttcagtttgccacctcgcccataa |
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Protein
| Protein ID | pfu_aug2.0_538.1_27519.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27519.t1 MIALRRQTQASSPLHCHLPEVEHISLGLFAAFLLLELTAGQTIYGMSCNEELLRQFSSLEKRVKILEKKTRTSPQGPDCP EGWSHFQSSCYKASISMMNWTAAHKTCIDQGAKLVEIETIKEDQFLKKLVNDSDTRLDYWTGGVYNEVLGKWMWIDSNKS LTYTNWRPGEPNRLNDENGVEDRMEIHLFKGKVTSEQVILGKRGMSEFVRSRIYGLELLDVYRNETGEDLREGDEIEVRT AGSGATCGITLTEGEEYYLSAYRWKNTFYVGLCGMHTTSLTQLEMDGIVNGRFDCNCKINNGWPRIPRGEENLTCALAML RGGYDYRCLMNYAVCRFNEQSKRCSWEADESQEACQRFSLPPRP |
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