Gene
| Gene Model ID | pfu_aug2.0_538.1_27520 |
|---|---|
| Locus | scaffold538.1 : 267961 ... 283714 : - |
| To GenomeBrowser | scaffold538.1:267961..283714 |
| Genes list of scaffold | scaffold538.1 |
| Synonym | pfu_aug1.0_3727.1_08707 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_538.1_27520.t1 | 1 | 1 | TIMP | 21 | 194 | 8.6e-21 | 74.3 | 1.4e-24 | 1.0e-20 | 74.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_538.1_27520.t1 | gi|115741898|ref|XP_001177756.1| | PREDICTED: metalloproteinase inhibitor 1 [Strongylocentrotus purpuratus] | 3.0e-11 |
| pfu_aug2.0_538.1_27520.t1 | gi|507532474|ref|XP_004650309.1| | PREDICTED: metalloproteinase inhibitor 3 [Jaculus jaculus] | 1.0e-10 |
| pfu_aug2.0_538.1_27520.t1 | gi|126339663|ref|XP_001366334.1| | PREDICTED: metalloproteinase inhibitor 3 [Monodelphis domestica] | 1.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_538.1_27520.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27520.t1 atgtggacgcaagttttggcattcgtcgttttgaccagcattctttctaagcaggtccgctcatgctcatgtatgccaga gcatgaacaagcaacgttttgctgggcggacgcagtatttaaagctaaagtcacgtcagaagaagctatcagggaaaatt caggacctttcatagagagcagaatatacggacttgaactactaggtgtctacagagatgtgtctggtgcgttgaaggag ggagatgaaataagggttcgaacagcgggagatggaggaagatgtggaatatcactttccagaggaaaagaatattatct gtcagcttacaagtatagaggcgagttcaatgtgggactttgtggcatgcacacctccgttcttactcaacatcaagagg aaggtatagtcaacggaaagttcgactgtaaatgtaaggttaagcaaaggttcagtagattccctgaagataaacaacac ttgatctgcgcatttgcaataatgcgtggaggatatgactacgattgcctaagggaccacgccttttgccgttttgatga acagagtcaaagatgtagctgggaggctgatgaaagtcaagaaatttgtaaacggtctagtttaccaccctaa |
|
Protein
| Protein ID | pfu_aug2.0_538.1_27520.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_538.1_27520.t1 MWTQVLAFVVLTSILSKQVRSCSCMPEHEQATFCWADAVFKAKVTSEEAIRENSGPFIESRIYGLELLGVYRDVSGALKE GDEIRVRTAGDGGRCGISLSRGKEYYLSAYKYRGEFNVGLCGMHTSVLTQHQEEGIVNGKFDCKCKVKQRFSRFPEDKQH LICAFAIMRGGYDYDCLRDHAFCRFDEQSQRCSWEADESQEICKRSSLPP |
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