Gene
| Gene Model ID | pfu_aug2.0_54.1_13488 |
|---|---|
| Locus | scaffold54.1 : 146086 ... 151732 : + |
| To GenomeBrowser | scaffold54.1:146086..151732 |
| Genes list of scaffold | scaffold54.1 |
| Synonym | pfu_aug1.0_38159.1_12312 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_54.1_13488.t1 | 2 | 1 | Med26 | 62 | 109 | 2.8e-12 | 45.9 | 2.0e-15 | 7.5e-12 | 44.5 |
| pfu_aug2.0_54.1_13488.t1 | 2 | 2 | Med26 | 177 | 190 | 2.8e-12 | 45.9 | 0.37 | 1400.0 | -1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_54.1_13488.t1 | gi|524885264|ref|XP_005099241.1| | PREDICTED: transcription elongation factor A N-terminal and central domain-containing protein 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_54.1_13488.t1 | gi|676421775|ref|XP_009043858.1| | hypothetical protein LOTGIDRAFT_227947 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_54.1_13488.t1 | gi|260792918|ref|XP_002591461.1| | hypothetical protein BRAFLDRAFT_119264 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_54.1_13488.t1 | gi|564228437|ref|XP_006258669.1| | PREDICTED: transcription elongation factor A N-terminal and central domain-containing protein 2 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_54.1_13488.t1 | gi|395840631|ref|XP_003793157.1| | PREDICTED: transcription elongation factor A N-terminal and central domain-containing protein 2 [Otolemur garnettii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_54.1_13488.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_54.1_13488.t1 atggacaagtttgttatcaagaaacctcgagataattcctcttatagtgagaaatctagtgggaaaccagccttaagaca atcaacaattgagtctttacagggagtggttgttgtagaggagatatggagagccaaggcaaagttaaagctgtctacca ccacaccggaccaaatggcggagtgcttggagaaattaggcaagaaagttccatcacgtaaagtcatgctggagacaaaa attggtagagtgataaacaaattgagaagacatgaaaacgaggcagtacaaaaggcagctcagagagtttatgtaaaatg gaaaactcacttcaaggaccacctggagaggccacagatagaggtcaaatgtgacctaaaaactgagaatatgaggaact cagccaaaaagatgttagctgatgctctgtcactagaggcatcgagtaccttgccagaggtgatagagagggaagtgttt tacgtccataaacgtcttataaaccatgcttacagaaggaccatgagggcagtagtgtttgctttacggcacaatgaaga cgttaaaaatcaagtgttagacagttcatttacagtcagtgattttgtaaaaagttacgtgaaagattga |
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Protein
| Protein ID | pfu_aug2.0_54.1_13488.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_54.1_13488.t1 MDKFVIKKPRDNSSYSEKSSGKPALRQSTIESLQGVVVVEEIWRAKAKLKLSTTTPDQMAECLEKLGKKVPSRKVMLETK IGRVINKLRRHENEAVQKAAQRVYVKWKTHFKDHLERPQIEVKCDLKTENMRNSAKKMLADALSLEASSTLPEVIEREVF YVHKRLINHAYRRTMRAVVFALRHNEDVKNQVLDSSFTVSDFVKSYVKD |
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