Gene
| Gene Model ID | pfu_aug2.0_54.1_13490 |
|---|---|
| Locus | scaffold54.1 : 170295 ... 184945 : + |
| To GenomeBrowser | scaffold54.1:170295..184945 |
| Genes list of scaffold | scaffold54.1 |
| Synonym | pfu_aug1.0_1393.1_29711 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_54.1_13490.t1 | 3 | 1 | Ank | 1 | 38 | 1.6e-13 | 49.7 | 1.2e-06 | 0.0031 | 17.2 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 1 | Ank_5 | 2 | 15 | 9.2e-10 | 38.4 | 1.0 | 2500.0 | -1.1 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 1 | Ank_3 | 2 | 37 | 1.0e-09 | 37.6 | 0.012 | 29.0 | 5.2 |
| pfu_aug2.0_54.1_13490.t1 | 2 | 1 | Ank_2 | 3 | 66 | 9.0e-12 | 45.1 | 1.8e-08 | 4.4e-05 | 23.7 |
| pfu_aug2.0_54.1_13490.t1 | 4 | 1 | Ank_4 | 28 | 63 | 3.8e-10 | 40.0 | 1.3e-05 | 0.031 | 14.7 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 2 | Ank_5 | 28 | 80 | 9.2e-10 | 38.4 | 5.2e-06 | 0.013 | 15.7 |
| pfu_aug2.0_54.1_13490.t1 | 4 | 2 | Ank_4 | 43 | 100 | 3.8e-10 | 40.0 | 8.0e-10 | 2.0e-06 | 28.1 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 2 | Ank | 44 | 64 | 1.6e-13 | 49.7 | 2.6e-05 | 0.065 | 13.0 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 2 | Ank_3 | 44 | 65 | 1.0e-09 | 37.6 | 0.00025 | 0.62 | 10.4 |
| pfu_aug2.0_54.1_13490.t1 | 2 | 2 | Ank_2 | 74 | 117 | 9.0e-12 | 45.1 | 3.9e-07 | 0.00097 | 19.4 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 3 | Ank_5 | 80 | 119 | 9.2e-10 | 38.4 | 1.7e-07 | 0.00043 | 20.4 |
| pfu_aug2.0_54.1_13490.t1 | 4 | 3 | Ank_4 | 82 | 118 | 3.8e-10 | 40.0 | 0.00013 | 0.33 | 11.5 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 3 | Ank_3 | 83 | 105 | 1.0e-09 | 37.6 | 8.4e-07 | 0.0021 | 18.1 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 3 | Ank | 84 | 111 | 1.6e-13 | 49.7 | 1.8e-06 | 0.0045 | 16.7 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 1 | CAP_GLY | 174 | 238 | 0.0 | 232.2 | 1.4e-24 | 3.4e-21 | 74.7 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 2 | CAP_GLY | 292 | 356 | 0.0 | 232.2 | 4.6e-27 | 1.1e-23 | 82.6 |
| pfu_aug2.0_54.1_13490.t1 | 3 | 3 | CAP_GLY | 437 | 499 | 0.0 | 232.2 | 2.3e-25 | 5.7e-22 | 77.1 |
| pfu_aug2.0_54.1_13490.t1 | 4 | 4 | Ank_4 | 532 | 544 | 3.8e-10 | 40.0 | 3.1 | 7600.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_54.1_13490.t1 | gi|585698999|ref|XP_006822686.1| | PREDICTED: CAP-Gly domain-containing linker protein 4-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_54.1_13490.t1 | gi|119620918|gb|EAX00513.1| | restin-like 2, isoform CRA_e [Homo sapiens] | 0.0 |
| pfu_aug2.0_54.1_13490.t1 | gi|512953848|ref|XP_004839301.1| | PREDICTED: CAP-Gly domain-containing linker protein 4 isoform X2 [Heterocephalus glaber] | 0.0 |
| pfu_aug2.0_54.1_13490.t1 | gi|586452854|ref|XP_006835344.1| | PREDICTED: CAP-Gly domain-containing linker protein 4 [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_54.1_13490.t1 | gi|530591894|ref|XP_005289590.1| | PREDICTED: CAP-Gly domain-containing linker protein 4 isoform X1 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_54.1_13490.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_54.1_13490.t1 atgacactgttacactactccagtaagtcaggggcggctggaataggggacgctgaaatagcggctaaggtggtaattat gctgctctccaaaggttccgatccaaacatacggtgccgatggacaaacatgacggctctccattatgccgcttatttcg atgttgtacctgtgataaaagtcctactcaaagctactaaagcgtacgatattgacagtacgtgtacggagtttgacaac ggttcgtccctacacatagcagcttctaatctggcatacgaggctgttaaagtccttcttcagagtggtgccaatgcttt actcaaagacgaccaggatagaactgctttagaatgcataccagaccctacaaacttagactcagatccagagatgggga aaattgtcttcaaactaaggaaaacacttcaggaggcgtgtcagccaacgcccaaagtccctccccctaattatgacctt gtacaaagtaaagtcacattgcaggcaatgggattaacactgggagacaaggttttagttggaggaattaagactggcac actgagatactgtggtccggcagagtttgccgctggattgtgggccggcattgagttggacgaaccaagtggaagaaacg atggtagtattggaggaatatcatatttccagtgtcctcgtaatcatggtatatttgctccagtgagtaagatagctaag ccagggtcaggtcctgtgagcagaccagattcaatgtcaccacacaaaccattacagaaagcctcatcagtagatgtgtc aaatgtcaaggccagagtcgatacaggtctgaaaggtcgagcaccatcgattacagacctggctgatatagaggttggag atagagtgattgtggccggtcagaggaaaggtaccgtacaattctgtggagataccaagtttgctccaggtatttggtac ggtatagagttggatcgtcctgccggcaagaacgatgggtctgtgaacaatgaacgttactttatatgtaaaccaaaaca tggtgtattcgctccagtgtctaggatacaaaagcttggagatcgaaggttcagttcaaatgagtctttagatgccatca gttggggcgcagtgtcagaaaaagttgacaggaaatcagtggcccctacaaatactaacacacctgtaagggccaggact cctaacaaaagaccaaagagtacaggccagtctgtttctcggaccccagtctcaggacagtccatatcaaggaccccagg ctcaagctcaaactttaaactcgaagtcggaatgagtgttttctgcaacaacgagttaggtgtagttcggtacattggac cagcagattttggtgaaggtgtgtgggtaggtgtagaactaagaactcctaaagggaaaaatgatggaagtgtacaagac aaacgatactttacgtgtaaacctgatcatggactattggtcagacccagtaaaattaccgtgcgcggaatcaatggtgc taaactcataaatgactactacggctcaaaggacagcgggggaagtaacgaggacattaaaatggatacaagaaatagag agcaaatgtgccaaatattgtacagttttagactagttgtttgttatttaatttacttgaaacctaagaatttagtagct tgccggaaagaattcccagagtgctattgttacatgctcggtatgggcatccttatgcagatagactttaacctgggatt tagctttgaaccataa |
|
Protein
| Protein ID | pfu_aug2.0_54.1_13490.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_54.1_13490.t1 MTLLHYSSKSGAAGIGDAEIAAKVVIMLLSKGSDPNIRCRWTNMTALHYAAYFDVVPVIKVLLKATKAYDIDSTCTEFDN GSSLHIAASNLAYEAVKVLLQSGANALLKDDQDRTALECIPDPTNLDSDPEMGKIVFKLRKTLQEACQPTPKVPPPNYDL VQSKVTLQAMGLTLGDKVLVGGIKTGTLRYCGPAEFAAGLWAGIELDEPSGRNDGSIGGISYFQCPRNHGIFAPVSKIAK PGSGPVSRPDSMSPHKPLQKASSVDVSNVKARVDTGLKGRAPSITDLADIEVGDRVIVAGQRKGTVQFCGDTKFAPGIWY GIELDRPAGKNDGSVNNERYFICKPKHGVFAPVSRIQKLGDRRFSSNESLDAISWGAVSEKVDRKSVAPTNTNTPVRART PNKRPKSTGQSVSRTPVSGQSISRTPGSSSNFKLEVGMSVFCNNELGVVRYIGPADFGEGVWVGVELRTPKGKNDGSVQD KRYFTCKPDHGLLVRPSKITVRGINGAKLINDYYGSKDSGGSNEDIKMDTRNREQMCQILYSFRLVVCYLIYLKPKNLVA CRKEFPECYCYMLGMGILMQIDFNLGFSFEP |
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